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Q88B12

- Q88B12_PSESM

UniProt

Q88B12 - Q88B12_PSESM

Protein
Submitted name:

HAD-superfamily hydrolase

Gene

PSPTO_0221

Organism
Pseudomonas syringae pv. tomato (strain DC3000)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 69 (01 Oct 2014)
      Sequence version 1 (01 Jun 2003)
      Previous versions | rss
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    Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi8 – 81MagnesiumImported
    Metal bindingi10 – 101Magnesium; via carbonyl oxygenImported
    Metal bindingi180 – 1801MagnesiumImported

    GO - Molecular functioni

    1. hydrolase activity Source: UniProtKB-KW
    2. metal ion binding Source: UniProtKB-KW

    Keywords - Molecular functioni

    HydrolaseImported

    Keywords - Ligandi

    MagnesiumImported, Metal-bindingImported

    Enzyme and pathway databases

    BioCyciPSYR223283:GJIX-216-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    HAD-superfamily hydrolaseImported
    Gene namesi
    Ordered Locus Names:PSPTO_0221Imported
    OrganismiPseudomonas syringae pv. tomato (strain DC3000)Imported
    Taxonomic identifieri223283 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000002515: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi223283.PSPTO_0221.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    3VAYX-ray1.98A/B1-230[»]
    ProteinModelPortaliQ88B12.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1011.
    HOGENOMiHOG000248345.
    KOiK07025.
    OMAiTLYDNYP.
    OrthoDBiEOG6W19QD.
    PhylomeDBiQ88B12.

    Family and domain databases

    Gene3Di3.40.50.1000. 1 hit.
    InterProiIPR023214. HAD-like_dom.
    IPR006439. HAD-SF_hydro_IA.
    [Graphical view]
    PfamiPF13419. HAD_2. 1 hit.
    [Graphical view]
    PRINTSiPR00413. HADHALOGNASE.
    SUPFAMiSSF56784. SSF56784. 1 hit.
    TIGRFAMsiTIGR01549. HAD-SF-IA-v1. 1 hit.
    TIGR01509. HAD-SF-IA-v3. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q88B12-1 [UniParc]FASTAAdd to Basket

    « Hide

    MIKLVTFDLD DTLWDTAPAI VGAEAALRDW LAEQAPKLGP VPVEHLWEIR    50
    SRLLDEDPSF KHRISALRRR VLFHALEDAG YDSDEAQQLA DESFEVFLHG 100
    RHQVQIFPEV QPTLEILAKT FTLGVITNGN ADVRRLGLAD YFAFALCAED 150
    LGIGKPDPAP FLEALRRAKV DASAAVHVGD HPSDDIAGAQ QAGMRAIWYN 200
    PQGKAWDADR LPDAEIHNLS QLPEVLARWA 230
    Length:230
    Mass (Da):25,545
    Last modified:June 1, 2003 - v1
    Checksum:iBEA95256D4C6D3BC
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE016853 Genomic DNA. Translation: AAO53767.1.
    RefSeqiNP_790072.1. NC_004578.1.

    Genome annotation databases

    EnsemblBacteriaiAAO53767; AAO53767; PSPTO_0221.
    GeneIDi1181829.
    KEGGipst:PSPTO_0221.
    PATRICi19991600. VBIPseSyr93040_0230.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE016853 Genomic DNA. Translation: AAO53767.1 .
    RefSeqi NP_790072.1. NC_004578.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    3VAY X-ray 1.98 A/B 1-230 [» ]
    ProteinModelPortali Q88B12.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 223283.PSPTO_0221.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAO53767 ; AAO53767 ; PSPTO_0221 .
    GeneIDi 1181829.
    KEGGi pst:PSPTO_0221.
    PATRICi 19991600. VBIPseSyr93040_0230.

    Phylogenomic databases

    eggNOGi COG1011.
    HOGENOMi HOG000248345.
    KOi K07025.
    OMAi TLYDNYP.
    OrthoDBi EOG6W19QD.
    PhylomeDBi Q88B12.

    Enzyme and pathway databases

    BioCyci PSYR223283:GJIX-216-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.1000. 1 hit.
    InterProi IPR023214. HAD-like_dom.
    IPR006439. HAD-SF_hydro_IA.
    [Graphical view ]
    Pfami PF13419. HAD_2. 1 hit.
    [Graphical view ]
    PRINTSi PR00413. HADHALOGNASE.
    SUPFAMi SSF56784. SSF56784. 1 hit.
    TIGRFAMsi TIGR01549. HAD-SF-IA-v1. 1 hit.
    TIGR01509. HAD-SF-IA-v3. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DC3000Imported.
    2. "Structure of 2-haloacid dehalogenase from Pseudomonas syringae pv. tomato DC3000."
      Hou Z., Zhang H., Li M., Chang W.
      Acta Crystallogr. D 69:1108-1114(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (1.98 ANGSTROMS) IN COMPLEX WITH MAGNESIUM.

    Entry informationi

    Entry nameiQ88B12_PSESM
    AccessioniPrimary (citable) accession number: Q88B12
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 1, 2003
    Last sequence update: June 1, 2003
    Last modified: October 1, 2014
    This is version 69 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3