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Q88B12

- Q88B12_PSESM

UniProt

Q88B12 - Q88B12_PSESM

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Protein
Submitted name:

HAD-superfamily hydrolase

Gene

PSPTO_0221

Organism
Pseudomonas syringae pv. tomato (strain DC3000)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi8 – 81MagnesiumImported
Metal bindingi10 – 101Magnesium; via carbonyl oxygenImported
Metal bindingi180 – 1801MagnesiumImported

GO - Molecular functioni

  1. hydrolase activity Source: UniProtKB-KW
  2. metal ion binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

HydrolaseImported

Keywords - Ligandi

MagnesiumImported, Metal-bindingImported

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-216-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
HAD-superfamily hydrolaseImported
Gene namesi
Ordered Locus Names:PSPTO_0221Imported
OrganismiPseudomonas syringae pv. tomato (strain DC3000)Imported
Taxonomic identifieri223283 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000002515: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi223283.PSPTO_0221.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3VAYX-ray1.98A/B1-230[»]
ProteinModelPortaliQ88B12.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1011.
HOGENOMiHOG000248345.
KOiK07025.
OMAiTLYDNYP.
OrthoDBiEOG6W19QD.
PhylomeDBiQ88B12.

Family and domain databases

Gene3Di3.40.50.1000. 1 hit.
InterProiIPR023214. HAD-like_dom.
IPR006439. HAD-SF_hydro_IA.
[Graphical view]
PfamiPF13419. HAD_2. 1 hit.
[Graphical view]
PRINTSiPR00413. HADHALOGNASE.
SUPFAMiSSF56784. SSF56784. 1 hit.
TIGRFAMsiTIGR01549. HAD-SF-IA-v1. 1 hit.
TIGR01509. HAD-SF-IA-v3. 1 hit.

Sequencei

Sequence statusi: Complete.

Q88B12-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MIKLVTFDLD DTLWDTAPAI VGAEAALRDW LAEQAPKLGP VPVEHLWEIR
60 70 80 90 100
SRLLDEDPSF KHRISALRRR VLFHALEDAG YDSDEAQQLA DESFEVFLHG
110 120 130 140 150
RHQVQIFPEV QPTLEILAKT FTLGVITNGN ADVRRLGLAD YFAFALCAED
160 170 180 190 200
LGIGKPDPAP FLEALRRAKV DASAAVHVGD HPSDDIAGAQ QAGMRAIWYN
210 220 230
PQGKAWDADR LPDAEIHNLS QLPEVLARWA
Length:230
Mass (Da):25,545
Last modified:June 1, 2003 - v1
Checksum:iBEA95256D4C6D3BC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO53767.1.
RefSeqiNP_790072.1. NC_004578.1.

Genome annotation databases

EnsemblBacteriaiAAO53767; AAO53767; PSPTO_0221.
GeneIDi1181829.
KEGGipst:PSPTO_0221.
PATRICi19991600. VBIPseSyr93040_0230.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO53767.1 .
RefSeqi NP_790072.1. NC_004578.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3VAY X-ray 1.98 A/B 1-230 [» ]
ProteinModelPortali Q88B12.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 223283.PSPTO_0221.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAO53767 ; AAO53767 ; PSPTO_0221 .
GeneIDi 1181829.
KEGGi pst:PSPTO_0221.
PATRICi 19991600. VBIPseSyr93040_0230.

Phylogenomic databases

eggNOGi COG1011.
HOGENOMi HOG000248345.
KOi K07025.
OMAi TLYDNYP.
OrthoDBi EOG6W19QD.
PhylomeDBi Q88B12.

Enzyme and pathway databases

BioCyci PSYR223283:GJIX-216-MONOMER.

Family and domain databases

Gene3Di 3.40.50.1000. 1 hit.
InterProi IPR023214. HAD-like_dom.
IPR006439. HAD-SF_hydro_IA.
[Graphical view ]
Pfami PF13419. HAD_2. 1 hit.
[Graphical view ]
PRINTSi PR00413. HADHALOGNASE.
SUPFAMi SSF56784. SSF56784. 1 hit.
TIGRFAMsi TIGR01549. HAD-SF-IA-v1. 1 hit.
TIGR01509. HAD-SF-IA-v3. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DC3000Imported.
  2. "Structure of 2-haloacid dehalogenase from Pseudomonas syringae pv. tomato DC3000."
    Hou Z., Zhang H., Li M., Chang W.
    Acta Crystallogr. D 69:1108-1114(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.98 ANGSTROMS) IN COMPLEX WITH MAGNESIUM.

Entry informationi

Entry nameiQ88B12_PSESM
AccessioniPrimary (citable) accession number: Q88B12
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: October 29, 2014
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteomeImported

External Data

Dasty 3