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Q88B12

- Q88B12_PSESM

UniProt

Q88B12 - Q88B12_PSESM

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Protein
Submitted name: HAD-superfamily hydrolase
Gene
PSPTO_0221
Organism
Pseudomonas syringae pv. tomato (strain DC3000)
Status
Unreviewed - Annotation score: 1 out of 5 - Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi8 – 81MagnesiumImported
Metal bindingi10 – 101Magnesium; via carbonyl oxygenImported
Metal bindingi180 – 1801MagnesiumImported

GO - Molecular functioni

  1. hydrolase activity Source: UniProtKB-KW
  2. metal ion binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

HydrolaseImported

Keywords - Ligandi

MagnesiumImported, Metal-bindingImported

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-216-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
HAD-superfamily hydrolaseImported
Gene namesi
Ordered Locus Names:PSPTO_0221Imported
OrganismiPseudomonas syringae pv. tomato (strain DC3000)Imported
Taxonomic identifieri223283 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000002515: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi223283.PSPTO_0221.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3VAYX-ray1.98A/B1-230[»]
ProteinModelPortaliQ88B12.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1011.
HOGENOMiHOG000248345.
KOiK07025.
OMAiTLYDNYP.
OrthoDBiEOG6W19QD.
PhylomeDBiQ88B12.

Family and domain databases

Gene3Di3.40.50.1000. 1 hit.
InterProiIPR023214. HAD-like_dom.
IPR006439. HAD-SF_hydro_IA.
[Graphical view]
PfamiPF13419. HAD_2. 1 hit.
[Graphical view]
PRINTSiPR00413. HADHALOGNASE.
SUPFAMiSSF56784. SSF56784. 1 hit.
TIGRFAMsiTIGR01549. HAD-SF-IA-v1. 1 hit.
TIGR01509. HAD-SF-IA-v3. 1 hit.

Sequencei

Sequence statusi: Complete.

Q88B12-1 [UniParc]FASTAAdd to Basket

« Hide

MIKLVTFDLD DTLWDTAPAI VGAEAALRDW LAEQAPKLGP VPVEHLWEIR    50
SRLLDEDPSF KHRISALRRR VLFHALEDAG YDSDEAQQLA DESFEVFLHG 100
RHQVQIFPEV QPTLEILAKT FTLGVITNGN ADVRRLGLAD YFAFALCAED 150
LGIGKPDPAP FLEALRRAKV DASAAVHVGD HPSDDIAGAQ QAGMRAIWYN 200
PQGKAWDADR LPDAEIHNLS QLPEVLARWA 230
Length:230
Mass (Da):25,545
Last modified:June 1, 2003 - v1
Checksum:iBEA95256D4C6D3BC
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE016853 Genomic DNA. Translation: AAO53767.1.
RefSeqiNP_790072.1. NC_004578.1.

Genome annotation databases

EnsemblBacteriaiAAO53767; AAO53767; PSPTO_0221.
GeneIDi1181829.
KEGGipst:PSPTO_0221.
PATRICi19991600. VBIPseSyr93040_0230.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE016853 Genomic DNA. Translation: AAO53767.1 .
RefSeqi NP_790072.1. NC_004578.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
3VAY X-ray 1.98 A/B 1-230 [» ]
ProteinModelPortali Q88B12.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 223283.PSPTO_0221.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAO53767 ; AAO53767 ; PSPTO_0221 .
GeneIDi 1181829.
KEGGi pst:PSPTO_0221.
PATRICi 19991600. VBIPseSyr93040_0230.

Phylogenomic databases

eggNOGi COG1011.
HOGENOMi HOG000248345.
KOi K07025.
OMAi TLYDNYP.
OrthoDBi EOG6W19QD.
PhylomeDBi Q88B12.

Enzyme and pathway databases

BioCyci PSYR223283:GJIX-216-MONOMER.

Family and domain databases

Gene3Di 3.40.50.1000. 1 hit.
InterProi IPR023214. HAD-like_dom.
IPR006439. HAD-SF_hydro_IA.
[Graphical view ]
Pfami PF13419. HAD_2. 1 hit.
[Graphical view ]
PRINTSi PR00413. HADHALOGNASE.
SUPFAMi SSF56784. SSF56784. 1 hit.
TIGRFAMsi TIGR01549. HAD-SF-IA-v1. 1 hit.
TIGR01509. HAD-SF-IA-v3. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DC3000Imported.
  2. "Structure of 2-haloacid dehalogenase from Pseudomonas syringae pv. tomato DC3000."
    Hou Z., Zhang H., Li M., Chang W.
    Acta Crystallogr. D 69:1108-1114(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.98 ANGSTROMS) IN COMPLEX WITH MAGNESIUM.

Entry informationi

Entry nameiQ88B12_PSESM
AccessioniPrimary (citable) accession number: Q88B12
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: June 11, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome

External Data

Dasty 3

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