HAD-superfamily hydrolase - Pseudomonas syringae pv. tomato (strain DC3000)

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Q88B12 (Q88B12_PSESM) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 60. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
HAD-superfamily hydrolase EMBL AAO53767.1

Gene names

Ordered Locus Names:

PSPTO_0221 EMBL AAO53767.1

Organism

Pseudomonas syringae pv. tomato (strain DC3000) [Complete proteome] [HAMAP] EMBL AAO53767.1

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas ›

Protein attributes

Sequence length	230 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Molecular function	Hydrolase SAAS SAAS006439 EMBL AAO53767.1
Technical term	3D-structure PDB 3VAY Complete proteome
Gene Ontology (GO)
Molecular_function	phosphoglycolate phosphatase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q88B12 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: BEA95256D4C6D3BC
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230

25,545

        10         20         30         40         50         60 
MIKLVTFDLD DTLWDTAPAI VGAEAALRDW LAEQAPKLGP VPVEHLWEIR SRLLDEDPSF 

        70         80         90        100        110        120 
KHRISALRRR VLFHALEDAG YDSDEAQQLA DESFEVFLHG RHQVQIFPEV QPTLEILAKT 

       130        140        150        160        170        180 
FTLGVITNGN ADVRRLGLAD YFAFALCAED LGIGKPDPAP FLEALRRAKV DASAAVHVGD 

       190        200        210        220        230 
HPSDDIAGAQ QAGMRAIWYN PQGKAWDADR LPDAEIHNLS QLPEVLARWA

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000." Buell C.R., Joardar V., Lindeberg M., Selengut J., Paulsen I.T., Gwinn M.L., Dodson R.J., DeBoy R.T., Durkin A.S., Kolonay J.F., Madupu R., Daugherty S.C., Brinkac L.M., Beanan M.J., Haft D.H., Nelson W.C., Davidsen T.M., Zafar N. Collmer A. Proc. Natl. Acad. Sci. U.S.A. 100:10181-10186(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DC3000 EMBL AAO53767.1.
[2]	"Crystal structure of 2-Haloacid Dehalogenase from Pseudomonas syringae pv. Tomato DC3000." Hou Z., Zhang H., Li M., Chang W. Submitted (DEC-2011) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.98 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE016853 Genomic DNA. Translation: AAO53767.1.

RefSeq

NP_790072.1. NC_004578.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3VAY	X-ray	1.98	A/B	1-230	[»]

ProteinModelPortal

ModBase

Protein-protein interaction databases

STRING

223283.PSPTO_0221.

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

AAO53767; AAO53767; PSPTO_0221.

GeneID

KEGG

pst:PSPTO_0221.

PATRIC

19991600. VBIPseSyr93040_0230.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

HOGENOM

KO

OMA

ProtClustDB

Enzyme and pathway databases

BioCyc

PSYR223283:GJIX-216-MONOMER.

Family and domain databases

Gene3D

3.40.50.1000. 1 hit.

InterPro

IPR023214. HAD-like_dom.
IPR006439. HAD-SF_hydro_IA_v1.
IPR006402. HAD-SF_hydro_IA_v3.
IPR005833. Haloacid_DH/epoxide_hydro.
[Graphical view]

Pfam

PF13419. HAD_2. 1 hit.
[Graphical view]

PRINTS

PR00413. HADHALOGNASE.

SUPFAM

SSF56784. HAD-like_dom. 1 hit.

TIGRFAMs

TIGR01549. HAD-SF-IA-v1. 1 hit.
TIGR01509. HAD-SF-IA-v3. 1 hit.

ProtoNet

Entry information

Entry name

Q88B12_PSESM

Accession

Primary (citable) accession number: Q88B12

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	June 1, 2003
Last modified:	May 1, 2013
This is version 60 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info