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Q88B12 (Q88B12_PSESM) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 65. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length230 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   LigandMagnesium PDB 3VAY
Metal-binding PDB 3VAY
   Molecular functionHydrolase EMBL AAO53767.1
   Technical term3D-structure PDB 3VAY
Complete proteome
Gene Ontology (GO)
   Molecular_functionhydrolase activity

Inferred from electronic annotation. Source: UniProtKB-KW

metal ion binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding81Magnesium PDB 3VAY
Metal binding101Magnesium; via carbonyl oxygen PDB 3VAY
Metal binding1801Magnesium PDB 3VAY

Sequences

Sequence LengthMass (Da)Tools
Q88B12 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: BEA95256D4C6D3BC

FASTA23025,545
        10         20         30         40         50         60 
MIKLVTFDLD DTLWDTAPAI VGAEAALRDW LAEQAPKLGP VPVEHLWEIR SRLLDEDPSF 

        70         80         90        100        110        120 
KHRISALRRR VLFHALEDAG YDSDEAQQLA DESFEVFLHG RHQVQIFPEV QPTLEILAKT 

       130        140        150        160        170        180 
FTLGVITNGN ADVRRLGLAD YFAFALCAED LGIGKPDPAP FLEALRRAKV DASAAVHVGD 

       190        200        210        220        230 
HPSDDIAGAQ QAGMRAIWYN PQGKAWDADR LPDAEIHNLS QLPEVLARWA 

« Hide

References

« Hide 'large scale' references
[1]"The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000."
Buell C.R., Joardar V., Lindeberg M., Selengut J., Paulsen I.T., Gwinn M.L., Dodson R.J., DeBoy R.T., Durkin A.S., Kolonay J.F., Madupu R., Daugherty S.C., Brinkac L.M., Beanan M.J., Haft D.H., Nelson W.C., Davidsen T.M., Zafar N. expand/collapse author list , Zhou L., Liu J., Yuan Q., Khouri H.M., Fedorova N.B., Tran B., Russell D., Berry K.J., Utterback T.R., Van Aken S.E., Feldblyum T.V., D'Ascenzo M., Deng W.-L., Ramos A.R., Alfano J.R., Cartinhour S., Chatterjee A.K., Delaney T.P., Lazarowitz S.G., Martin G.B., Schneider D.J., Tang X., Bender C.L., White O., Fraser C.M., Collmer A.
Proc. Natl. Acad. Sci. U.S.A. 100:10181-10186(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DC3000 EMBL AAO53767.1.
[2]"Structure of 2-haloacid dehalogenase from Pseudomonas syringae pv. tomato DC3000."
Hou Z., Zhang H., Li M., Chang W.
Acta Crystallogr. D 69:1108-1114(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.98 ANGSTROMS) IN COMPLEX WITH MAGNESIUM.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE016853 Genomic DNA. Translation: AAO53767.1.
RefSeqNP_790072.1. NC_004578.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3VAYX-ray1.98A/B1-230[»]
ProteinModelPortalQ88B12.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING223283.PSPTO_0221.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAO53767; AAO53767; PSPTO_0221.
GeneID1181829.
KEGGpst:PSPTO_0221.
PATRIC19991600. VBIPseSyr93040_0230.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1011.
HOGENOMHOG000248345.
KOK07025.
OMATLYDNYP.
OrthoDBEOG6W19QD.
ProtClustDBCLSK869233.

Enzyme and pathway databases

BioCycPSYR223283:GJIX-216-MONOMER.

Family and domain databases

Gene3D3.40.50.1000. 1 hit.
InterProIPR023214. HAD-like_dom.
IPR006439. HAD-SF_hydro_IA.
[Graphical view]
PfamPF13419. HAD_2. 1 hit.
[Graphical view]
PRINTSPR00413. HADHALOGNASE.
SUPFAMSSF56784. SSF56784. 1 hit.
TIGRFAMsTIGR01549. HAD-SF-IA-v1. 1 hit.
TIGR01509. HAD-SF-IA-v3. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ88B12_PSESM
AccessionPrimary (citable) accession number: Q88B12
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: February 19, 2014
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)