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Protein

Selenide, water dikinase

Gene

selD

Organism
Pseudomonas syringae pv. tomato (strain DC3000)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Synthesizes selenophosphate from selenide and ATP.UniRule annotation

Catalytic activityi

ATP + selenide + H2O = AMP + selenophosphate + phosphate.UniRule annotation

Cofactori

Mg2+UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei16 – 161UniRule annotation
Sitei19 – 191Important for catalytic activityUniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi229 – 2357ATPUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Kinase, Transferase

Keywords - Ligandi

ATP-binding, Magnesium, Nucleotide-binding, Selenium

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-805-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Selenide, water dikinaseUniRule annotation (EC:2.7.9.3UniRule annotation)
Alternative name(s):
Selenium donor proteinUniRule annotation
Selenophosphate synthaseUniRule annotation
Gene namesi
Name:selDUniRule annotation
Ordered Locus Names:PSPTO_0793
OrganismiPseudomonas syringae pv. tomato (strain DC3000)
Taxonomic identifieri223283 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000002515 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 344344Selenide, water dikinasePRO_0000127635Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi223283.PSPTO_0793.

Structurei

3D structure databases

ProteinModelPortaliQ889F7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the selenophosphate synthase 1 family. Class I subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105D4F. Bacteria.
COG0709. LUCA.
HOGENOMiHOG000219300.
KOiK01008.
OMAiPGSRFGK.
OrthoDBiEOG6VF32H.
PhylomeDBiQ889F7.

Family and domain databases

Gene3Di3.30.1330.10. 1 hit.
3.90.650.10. 1 hit.
HAMAPiMF_00625. SelD.
InterProiIPR010918. AIR_synth_C_dom.
IPR016188. PurM-like_N.
IPR023061. SelD_I.
IPR004536. SPS/SelD.
[Graphical view]
PfamiPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFiPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMiSSF56042. SSF56042. 1 hit.
TIGRFAMsiTIGR00476. selD. 1 hit.

Sequencei

Sequence statusi: Complete.

Q889F7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNEPIRLTQY SHGAGCGCKI SPKVLDVILA GSGAQNLDPK LWVGNTSRDD
60 70 80 90 100
AAVYALDDER GVVSTTDFFM PIVDDPFDFG RIAATNAISD IYAMGGDPLM
110 120 130 140 150
AIAILGWPVN VLPPEVAREV IRGGRAVCDA AGIPLAGGHS IDAPEPIFGL
160 170 180 190 200
AVTGVVQKKH MKRNDTAQAG CVLYLTKPLG IGILTTAEKK ARLREEDMGL
210 220 230 240 250
ARDWMCTLNT PGSRFGKLAG VAAMTDVTGF GLLGHLVEMA DGAGLTARLD
260 270 280 290 300
YAAVPRLPGV EHYIAEGCVP GGTLRNFESY GDKIAALSDA QRDLLCDPQT
310 320 330 340
SGGLLVAVSP EGEAEFLAVA AELGLQLNPI GTLLERQTHA VEVF
Length:344
Mass (Da):36,195
Last modified:June 20, 2003 - v1
Checksum:iAD50B972B7771F4B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO54335.1.
RefSeqiNP_790640.1. NC_004578.1.
WP_011103287.1. NC_004578.1.

Genome annotation databases

EnsemblBacteriaiAAO54335; AAO54335; PSPTO_0793.
GeneIDi1182418.
KEGGipst:PSPTO_0793.
PATRICi19992787. VBIPseSyr93040_0806.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO54335.1.
RefSeqiNP_790640.1. NC_004578.1.
WP_011103287.1. NC_004578.1.

3D structure databases

ProteinModelPortaliQ889F7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi223283.PSPTO_0793.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO54335; AAO54335; PSPTO_0793.
GeneIDi1182418.
KEGGipst:PSPTO_0793.
PATRICi19992787. VBIPseSyr93040_0806.

Phylogenomic databases

eggNOGiENOG4105D4F. Bacteria.
COG0709. LUCA.
HOGENOMiHOG000219300.
KOiK01008.
OMAiPGSRFGK.
OrthoDBiEOG6VF32H.
PhylomeDBiQ889F7.

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-805-MONOMER.

Family and domain databases

Gene3Di3.30.1330.10. 1 hit.
3.90.650.10. 1 hit.
HAMAPiMF_00625. SelD.
InterProiIPR010918. AIR_synth_C_dom.
IPR016188. PurM-like_N.
IPR023061. SelD_I.
IPR004536. SPS/SelD.
[Graphical view]
PfamiPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]
PIRSFiPIRSF036407. Selenphspht_syn. 1 hit.
SUPFAMiSSF56042. SSF56042. 1 hit.
TIGRFAMsiTIGR00476. selD. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DC3000.

Entry informationi

Entry nameiSELD_PSESM
AccessioniPrimary (citable) accession number: Q889F7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 20, 2003
Last sequence update: June 20, 2003
Last modified: November 11, 2015
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.