Q889F7 (SELD_PSESM) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Selenide, water dikinase
EC=2.7.9.3

Alternative name(s):
Selenium donor protein
Selenophosphate synthase

Gene names

Name:	selD
Ordered Locus Names:	PSPTO_0793

Organism

Pseudomonas syringae pv. tomato (strain DC3000) [Complete proteome] [HAMAP]

Taxonomic identifier

223283 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas

Protein attributes

Sequence length	344 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Synthesizes selenophosphate from selenide and ATP By similarity. HAMAP MF_00625
Catalytic activity	ATP + selenide + H2O = AMP + selenophosphate + phosphate. HAMAP MF_00625
Cofactor	Magnesium By similarity. HAMAP MF_00625
Sequence similarities	Belongs to the selenophosphate synthase 1 family. Class I subfamily.

Ontologies

Keywords
Ligand	ATP-binding Magnesium Nucleotide-binding Selenium
Molecular function	Kinase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW selenide, water dikinase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 344	344	Selenide, water dikinase HAMAP MF_00625		PRO_0000127635
Regions
	Nucleotide binding	229 – 235	7	ATP Potential
Sites
	Active site	16	1	Potential
	Site	19	1	Important for catalytic activity By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q889F7 [UniParc]. Last modified June 20, 2003. Version 1. Checksum: AD50B972B7771F4B	FASTA	344	36,195
	10 20 30 40 50 60 MNEPIRLTQY SHGAGCGCKI SPKVLDVILA GSGAQNLDPK LWVGNTSRDD AAVYALDDER 70 80 90 100 110 120 GVVSTTDFFM PIVDDPFDFG RIAATNAISD IYAMGGDPLM AIAILGWPVN VLPPEVAREV 130 140 150 160 170 180 IRGGRAVCDA AGIPLAGGHS IDAPEPIFGL AVTGVVQKKH MKRNDTAQAG CVLYLTKPLG 190 200 210 220 230 240 IGILTTAEKK ARLREEDMGL ARDWMCTLNT PGSRFGKLAG VAAMTDVTGF GLLGHLVEMA 250 260 270 280 290 300 DGAGLTARLD YAAVPRLPGV EHYIAEGCVP GGTLRNFESY GDKIAALSDA QRDLLCDPQT 310 320 330 340 SGGLLVAVSP EGEAEFLAVA AELGLQLNPI GTLLERQTHA VEVF

References

[1]

"The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000." Buell C.R., Joardar V., Lindeberg M., Selengut J., Paulsen I.T., Gwinn M.L., Dodson R.J., DeBoy R.T., Durkin A.S., Kolonay J.F., Madupu R., Daugherty S.C., Brinkac L.M., Beanan M.J., Haft D.H., Nelson W.C., Davidsen T.M., Zafar N. , Zhou L., Liu J., Yuan Q., Khouri H.M., Fedorova N.B., Tran B., Russell D., Berry K.J., Utterback T.R., Van Aken S.E., Feldblyum T.V., D'Ascenzo M., Deng W.-L., Ramos A.R., Alfano J.R., Cartinhour S., Chatterjee A.K., Delaney T.P., Lazarowitz S.G., Martin G.B., Schneider D.J., Tang X., Bender C.L., White O., Fraser C.M., Collmer A. Proc. Natl. Acad. Sci. U.S.A. 100:10181-10186(2003) [PubMed: 12928499] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DC3000.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE016853 Genomic DNA. Translation: AAO54335.1.
RefSeq	NP_790640.1. NC_004578.1.
3D structure databases
ProteinModelPortal	Q889F7.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	1182418.
GenomeReviews	Gene locus PSPTO_0793 in contig AE016853_GR.
KEGG	pst:PSPTO_0793.
NMPDR	fig|223283.1.peg.778.
PATRIC	19992787. VBIPseSyr93040_0806.
TIGR	PSPTO_0793.
Phylogenomic databases
HOGENOM	HBG383791.
OMA	MMAIAIL.
ProtClustDB	PRK00943.
Enzyme and pathway databases
BioCyc	PSYR223283:PSPTO_0793-MONOMER.
Family and domain databases
HAMAP	MF_00625. SelD. [Tree]
InterPro	IPR000728. AIR_synth. IPR010918. AIR_synth_C. IPR016188. PurM_N-like. IPR004536. SelD. IPR023061. SelD_I. [Graphical view]
KO	K01008.
Pfam	PF00586. AIRS. 1 hit. PF02769. AIRS_C. 1 hit. [Graphical view]
PIRSF	PIRSF036407. Selenphspht_syn. 1 hit.
SUPFAM	SSF56042. AIR_synth_C. 1 hit. SSF55326. PurM_N-like. 1 hit.
TIGRFAMs	TIGR00476. SelD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

SELD_PSESM

Accession

Primary (citable) accession number: Q889F7

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 20, 2003
Last sequence update:	June 20, 2003
Last modified:	January 25, 2012
This is version 56 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program