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Protein

Capsid protein

Gene
N/A
Organism
Tomato yellow leaf curl virus - Mild
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds the genomic viral ssDNA and shuttles it into and out of the cell nucleus.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Viral penetration into host nucleusUniRule annotation, Virus entry into host cell

Keywords - Ligandi

DNA-bindingUniRule annotation, Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid proteinUniRule annotation
Alternative name(s):
Coat proteinUniRule annotation
OrganismiTomato yellow leaf curl virus - MildImported
Taxonomic identifieri220944 [NCBI]
Taxonomic lineageiVirusesssDNA virusesGeminiviridaeBegomovirus

Subcellular locationi

  • Host nucleus UniRule annotation
  • Virion UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Capsid protein, Host nucleusUniRule annotation, T=1 icosahedral capsid proteinUniRule annotation, Virion

Family & Domainsi

Sequence similaritiesi

Belongs to the geminiviridae capsid protein family.UniRule annotation

Keywords - Domaini

Zinc-fingerUniRule annotation

Family and domain databases

InterProiIPR000650. Gem_coat_AR1.
IPR000263. GV_A/BR1_coat.
[Graphical view]
PfamiPF00844. Gemini_coat. 1 hit.
[Graphical view]
PRINTSiPR00224. GEMCOATAR1.
PR00223. GEMCOATARBR1.

Sequencei

Sequence statusi: Complete.

Q88941-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKRPGDIII STPVSKVRRR LNFDSPYSSR AAVPIVQGTN KRRSWTYRPM
60 70 80 90 100
YRKPRIYRMY RSPDVPRGCE GPCKVQSYEQ RDDIKHTGIV RCVSDVTRGS
110 120 130 140 150
GITHRVGKRF CVKSIYFLGK VWMDENIKKQ NHTNQVMFFL VRDRRPYGNS
160 170 180 190 200
PMDFGQVFNM FDNEPSTATV KNDLRDRFQV MRKFHATVIG GPSGMKEQAL
210 220 230 240 250
VKRFFKINSH VTYNHQEAAK YENHTENALL LYMACTHASN PVYATMKIRI

YFYDSISN
Length:258
Mass (Da):30,101
Last modified:November 1, 1996 - v1
Checksum:iD4CE7C739AEE7170
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X76319 Genomic DNA. Translation: CAA53952.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X76319 Genomic DNA. Translation: CAA53952.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiIPR000650. Gem_coat_AR1.
IPR000263. GV_A/BR1_coat.
[Graphical view]
PfamiPF00844. Gemini_coat. 1 hit.
[Graphical view]
PRINTSiPR00224. GEMCOATAR1.
PR00223. GEMCOATARBR1.
ProtoNetiSearch...

Publicationsi

  1. Antignus Y.
    Submitted (NOV-1993) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Cloning of tomato yellow leaf curl virus (TYLCV) and the complete nucleotide sequence of a mild infectious clone."
    Antignus E.Y., Cohen S.
    Phytopathology 84:707-712(1994)
    [AGRICOLA] [Europe PMC]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ88941_9GEMI
AccessioniPrimary (citable) accession number: Q88941
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: June 8, 2016
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.