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Protein

Capsid protein

Gene
N/A
Organism
Tobacco ringspot virus (TobRV) (TRSV)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Alternative name(s):
Coat protein
OrganismiTobacco ringspot virus (TobRV) (TRSV)
Taxonomic identifieri12282 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stagePicornaviralesSecoviridaeComovirinaeNepovirus
Virus hostiCucumis sativus (Cucumber) [TaxID: 3659]
Glycine max (Soybean) (Glycine hispida) [TaxID: 3847]
Nicotiana tabacum (Common tobacco) [TaxID: 4097]
Solanum lycopersicum (Tomato) (Lycopersicon esculentum) [TaxID: 4081]

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
PropeptideiPRO_00000371311 – 22
ChainiPRO_00000371323 – 515Capsid proteinAdd BLAST513

Proteomic databases

PRIDEiQ88894.

Interactioni

Subunit structurei

The virus coat is formed of 60 copies of the coat protein.

Structurei

Secondary structure

1515
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi12 – 19Combined sources8
Beta strandi29 – 34Combined sources6
Helixi35 – 41Combined sources7
Helixi44 – 53Combined sources10
Beta strandi59 – 65Combined sources7
Beta strandi75 – 83Combined sources9
Helixi87 – 90Combined sources4
Helixi96 – 99Combined sources4
Beta strandi105 – 111Combined sources7
Beta strandi117 – 121Combined sources5
Turni122 – 126Combined sources5
Beta strandi130 – 133Combined sources4
Beta strandi141 – 146Combined sources6
Beta strandi159 – 165Combined sources7
Beta strandi180 – 184Combined sources5
Beta strandi191 – 202Combined sources12
Beta strandi210 – 212Combined sources3
Beta strandi227 – 230Combined sources4
Helixi231 – 236Combined sources6
Beta strandi239 – 242Combined sources4
Beta strandi244 – 252Combined sources9
Beta strandi259 – 267Combined sources9
Helixi275 – 280Combined sources6
Beta strandi284 – 286Combined sources3
Beta strandi288 – 295Combined sources8
Beta strandi303 – 306Combined sources4
Beta strandi308 – 310Combined sources3
Beta strandi312 – 322Combined sources11
Beta strandi331 – 342Combined sources12
Beta strandi349 – 351Combined sources3
Beta strandi357 – 364Combined sources8
Turni369 – 371Combined sources3
Beta strandi388 – 394Combined sources7
Helixi398 – 404Combined sources7
Beta strandi406 – 418Combined sources13
Turni425 – 427Combined sources3
Beta strandi432 – 436Combined sources5
Beta strandi447 – 452Combined sources6
Beta strandi455 – 460Combined sources6
Beta strandi472 – 474Combined sources3
Beta strandi480 – 484Combined sources5
Turni489 – 491Combined sources3
Beta strandi494 – 510Combined sources17
Beta strandi512 – 515Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1A6CX-ray3.50A3-515[»]
ProteinModelPortaliQ88894.
SMRiQ88894.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ88894.

Family & Domainsi

Family and domain databases

InterProiView protein in InterPro
IPR005054. Nepo_coat.
IPR005305. Nepo_coat_C.
IPR005306. Nepo_coat_N.
PfamiView protein in Pfam
PF03391. Nepo_coat. 1 hit.
PF03688. Nepo_coat_C. 1 hit.
PF03689. Nepo_coat_N. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q88894-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MCAVTVVPDP TCCGTLSFKV PKDAKKGKHL GTFDIRQAIM DYGGLHSQEW
60 70 80 90 100
CAKGIVNPTF TVRMHAPRNA FAGLSIACTF DDYKRIDLPA LGNECPPSEM
110 120 130 140 150
FELPTKVFML KDADVHEWQF NYGELTGHGL CNWANVATQP TLYFFVASTN
160 170 180 190 200
QVTMAADWQC IVTMHVDMGP VIDRFELNPT MTWPIQLGDT FAIDRYYEAK
210 220 230 240 250
EIKLDGSTSM LSISYNFGGP VKHSKKHAIS YSRAVMSRNL GWSGTISGSV
260 270 280 290 300
KSVSSLFCTA SFVIFPWECE APPTLRQVLW GPHQIMHGDG QFEIAIKTRL
310 320 330 340 350
HSAATTEEGF GRLGILPLSG PIAPDAHVGS YEFIVHINTW RPDSQVHPPM
360 370 380 390 400
FSSSELYNWF TLTNLKPDAN TGVVNFDIPG YIHDFASKDA TVTLASNPLS
410 420 430 440 450
WLVAATGWHY GEVDLCISWS RSKQAQAQEG SVSITTNYRD WGAYWQGQAR
460 470 480 490 500
IYDLRRTEAE IPIFLGSYAG ATPSGALGKQ NYVRISIVNA KDIVALRVCL
510
RPKSIKFWGR SATLF
Length:515
Mass (Da):57,168
Last modified:November 1, 1996 - v1
Checksum:i22084021EA349E96
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L09205 Genomic RNA. Translation: AAA74963.1.

Similar proteinsi

Entry informationi

Entry nameiCAPSD_TRSV
AccessioniPrimary (citable) accession number: Q88894
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: November 1, 1996
Last modified: May 10, 2017
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Direct protein sequencing

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references