Q887F8 (Q887F8_PSESM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Superoxide dismutase [Cu-Zn] RuleBase RU000393
EC=1.15.1.1 RuleBase RU000393

Gene names

Name:	sodC EMBL AAO54860.1
Ordered Locus Names:	PSPTO_1338 EMBL AAO54860.1

Organism

Pseudomonas syringae pv. tomato (strain DC3000) [Complete proteome] [HAMAP] EMBL AAO54860.1

Taxonomic identifier

223283 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas syringae group › Pseudomonas syringae group genomosp. 3 › Pseudomonas syringae pv. tomato

Protein attributes

Sequence length	172 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Destroys radicals which are normally produced within the cells and which are toxic to biological systems By similarity. RuleBase RU000393
Catalytic activity	2 superoxide + 2 H+ = O2 + H2O2. RuleBase RU000393
Cofactor	Binds 1 copper ion per subunit By similarity. RuleBase RU000393 Binds 1 zinc ion per subunit By similarity. RuleBase RU000393
Sequence similarities	Belongs to the Cu-Zn superoxide dismutase family. RuleBase RU000393

Ontologies

Keywords
Ligand	Copper RuleBase RU000393 Metal-binding RuleBase RU000393 Zinc RuleBase RU000393
Molecular function	Oxidoreductase RuleBase RU000393
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	removal of superoxide radicals Inferred from sequence or structural similarity Ref.1. Source: JCVI
Molecular_function	metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW superoxide dismutase activity Inferred from sequence or structural similarity Ref.1. Source: JCVI
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q887F8 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: C829BC408590A472	FASTA	172	17,465
	10 20 30 40 50 60 MKPHLLLGLL GAFSLSVQAA SLDVPINLVS ADGAPKLIGS VTVSETEYGL LFTPKLNGLP 70 80 90 100 110 120 AGIHGFHVHE NGSCEAGTKD GVKVAALAAG GHFDPAKTGK HLGPYARGHL GDLPALYVTA 130 140 150 160 170 DGTADYPVLA PRLKKLSEIK GHALMVHAGG DNHADMPKPL GGGGDRAACG VI

References

[1]

"The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000." Buell C.R., Joardar V., Lindeberg M., Selengut J., Paulsen I.T., Gwinn M.L., Dodson R.J., DeBoy R.T., Durkin A.S., Kolonay J.F., Madupu R., Daugherty S.C., Brinkac L.M., Beanan M.J., Haft D.H., Nelson W.C., Davidsen T.M., Zafar N. , Zhou L., Liu J., Yuan Q., Khouri H.M., Fedorova N.B., Tran B., Russell D., Berry K.J., Utterback T.R., Van Aken S.E., Feldblyum T.V., D'Ascenzo M., Deng W.-L., Ramos A.R., Alfano J.R., Cartinhour S., Chatterjee A.K., Delaney T.P., Lazarowitz S.G., Martin G.B., Schneider D.J., Tang X., Bender C.L., White O., Fraser C.M., Collmer A. Proc. Natl. Acad. Sci. U.S.A. 100:10181-10186(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DC3000 EMBL AAO54860.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE016853 Genomic DNA. Translation: AAO54860.1.
RefSeq	NP_791165.1. NC_004578.1.
3D structure databases
HSSP	HSSP built from PDB template 1EQW based on UniProtKB P53636.
ProteinModelPortal	Q887F8.
ModBase	Search...
Protein-protein interaction databases
STRING	223283.PSPTO_1338.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAO54860; AAO54860; PSPTO_1338.
GeneID	1182974.
KEGG	pst:PSPTO_1338.
PATRIC	19993918. VBIPseSyr93040_1360.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG2032.
HOGENOM	HOG000263449.
KO	K04565.
OMA	HVNPSCD.
ProtClustDB	CLSK912668.
Enzyme and pathway databases
BioCyc	PSYR223283:GJIX-1363-MONOMER.
Family and domain databases
Gene3D	2.60.40.200. 1 hit.
InterPro	IPR024134. SOD_Cu/Zn_/chaperones. IPR018152. SOD_Cu/Zn_BS. IPR001424. SOD_Cu_Zn_dom. [Graphical view]
PANTHER	PTHR10003. PTHR10003. 1 hit.
Pfam	PF00080. Sod_Cu. 1 hit. [Graphical view]
SUPFAM	SSF49329. SOD_Cu_Zn. 1 hit.
PROSITE	PS00087. SOD_CU_ZN_1. 1 hit. PS00332. SOD_CU_ZN_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q887F8_PSESM

Accession

Primary (citable) accession number: Q887F8

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	June 1, 2003
Last modified:	May 1, 2013
This is version 82 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)