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Q887F8

- Q887F8_PSESM

UniProt

Q887F8 - Q887F8_PSESM

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Protein

Superoxide dismutase [Cu-Zn]

Gene

sodC

Organism
Pseudomonas syringae pv. tomato (strain DC3000)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Cofactori

Protein has several cofactor binding sites:
  • Note: Binds 1 copper ion per subunit.UniRule annotation
  • Note: Binds 1 zinc ion per subunit.UniRule annotation

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: JCVI

GO - Biological processi

  1. removal of superoxide radicals Source: JCVI
  2. superoxide metabolic process Source: JCVI
Complete GO annotation...

Keywords - Molecular functioni

OxidoreductaseUniRule annotation

Keywords - Ligandi

CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-1363-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodCImported
Ordered Locus Names:PSPTO_1338Imported
OrganismiPseudomonas syringae pv. tomato (strain DC3000)Imported
Taxonomic identifieri223283 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000002515: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi223283.PSPTO_1338.

Structurei

3D structure databases

ProteinModelPortaliQ887F8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG2032.
HOGENOMiHOG000263449.
KOiK04565.
OMAiMAAGGHW.
OrthoDBiEOG6K13RS.
PhylomeDBiQ887F8.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q887F8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKPHLLLGLL GAFSLSVQAA SLDVPINLVS ADGAPKLIGS VTVSETEYGL
60 70 80 90 100
LFTPKLNGLP AGIHGFHVHE NGSCEAGTKD GVKVAALAAG GHFDPAKTGK
110 120 130 140 150
HLGPYARGHL GDLPALYVTA DGTADYPVLA PRLKKLSEIK GHALMVHAGG
160 170
DNHADMPKPL GGGGDRAACG VI
Length:172
Mass (Da):17,465
Last modified:June 1, 2003 - v1
Checksum:iC829BC408590A472
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO54860.1.
RefSeqiNP_791165.1. NC_004578.1.

Genome annotation databases

EnsemblBacteriaiAAO54860; AAO54860; PSPTO_1338.
GeneIDi1182974.
KEGGipst:PSPTO_1338.
PATRICi19993918. VBIPseSyr93040_1360.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO54860.1 .
RefSeqi NP_791165.1. NC_004578.1.

3D structure databases

ProteinModelPortali Q887F8.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 223283.PSPTO_1338.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAO54860 ; AAO54860 ; PSPTO_1338 .
GeneIDi 1182974.
KEGGi pst:PSPTO_1338.
PATRICi 19993918. VBIPseSyr93040_1360.

Phylogenomic databases

eggNOGi COG2032.
HOGENOMi HOG000263449.
KOi K04565.
OMAi MAAGGHW.
OrthoDBi EOG6K13RS.
PhylomeDBi Q887F8.

Enzyme and pathway databases

BioCyci PSYR223283:GJIX-1363-MONOMER.

Family and domain databases

Gene3Di 2.60.40.200. 1 hit.
InterProi IPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view ]
Pfami PF00080. Sod_Cu. 1 hit.
[Graphical view ]
SUPFAMi SSF49329. SSF49329. 1 hit.
PROSITEi PS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DC3000Imported.

Entry informationi

Entry nameiQ887F8_PSESM
AccessioniPrimary (citable) accession number: Q887F8
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: November 26, 2014
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3