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Q886I1

- DEF2_PSESM

UniProt

Q886I1 - DEF2_PSESM

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Protein

Peptide deformylase 2

Gene

def2

Organism
Pseudomonas syringae pv. tomato (strain DC3000)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.UniRule annotation

Catalytic activityi

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide.UniRule annotation

Cofactori

Binds 1 Fe2+ ion.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi101 – 1011IronUniRule annotation
Metal bindingi143 – 1431IronUniRule annotation
Active sitei144 – 1441UniRule annotation
Metal bindingi147 – 1471IronUniRule annotation

GO - Molecular functioni

  1. iron ion binding Source: InterPro
  2. peptide deformylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

Iron, Metal-binding

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-1627-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Peptide deformylase 2UniRule annotation (EC:3.5.1.88UniRule annotation)
Short name:
PDF 2UniRule annotation
Alternative name(s):
Polypeptide deformylase 2UniRule annotation
Gene namesi
Name:def2UniRule annotation
Ordered Locus Names:PSPTO_1598
OrganismiPseudomonas syringae pv. tomato (strain DC3000)
Taxonomic identifieri223283 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000002515: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 179179Peptide deformylase 2PRO_0000082823Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi223283.PSPTO_1598.

Structurei

3D structure databases

ProteinModelPortaliQ886I1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the polypeptide deformylase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0242.
HOGENOMiHOG000243508.
KOiK01462.
OMAiRVCQVGD.
OrthoDBiEOG664CMF.
PhylomeDBiQ886I1.

Family and domain databases

Gene3Di3.90.45.10. 1 hit.
HAMAPiMF_00163. Pep_deformylase.
InterProiIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
PANTHERiPTHR10458. PTHR10458. 1 hit.
PfamiPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFiPIRSF004749. Pep_def. 1 hit.
PRINTSiPR01576. PDEFORMYLASE.
SUPFAMiSSF56420. SSF56420. 1 hit.
TIGRFAMsiTIGR00079. pept_deformyl. 1 hit.

Sequencei

Sequence statusi: Complete.

Q886I1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MIRNILKMGD ERLLRIAPPV PAEMFGSSEL ETLIADMFET MHSVGGVGLA
60 70 80 90 100
APQIGIDLQL VIFGFERSER YPQAEAVPQT ILLNPLITPL HPGVEEGWEG
110 120 130 140 150
CLSVPGLRGM VDRYQSIRYE GFDPDGQPIE RIAHGFHARV VQHECDHLIG
160 170
RLYPSRITDF SKFGFMDVMF PDMDPNADE
Length:179
Mass (Da):20,051
Last modified:June 1, 2003 - v1
Checksum:i7CD70D0ACA744A98
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE016853 Genomic DNA. Translation: AAO55118.1.
RefSeqiNP_791423.1. NC_004578.1.

Genome annotation databases

EnsemblBacteriaiAAO55118; AAO55118; PSPTO_1598.
GeneIDi1183235.
KEGGipst:PSPTO_1598.
PATRICi19994442. VBIPseSyr93040_1622.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE016853 Genomic DNA. Translation: AAO55118.1 .
RefSeqi NP_791423.1. NC_004578.1.

3D structure databases

ProteinModelPortali Q886I1.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 223283.PSPTO_1598.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAO55118 ; AAO55118 ; PSPTO_1598 .
GeneIDi 1183235.
KEGGi pst:PSPTO_1598.
PATRICi 19994442. VBIPseSyr93040_1622.

Phylogenomic databases

eggNOGi COG0242.
HOGENOMi HOG000243508.
KOi K01462.
OMAi RVCQVGD.
OrthoDBi EOG664CMF.
PhylomeDBi Q886I1.

Enzyme and pathway databases

BioCyci PSYR223283:GJIX-1627-MONOMER.

Family and domain databases

Gene3Di 3.90.45.10. 1 hit.
HAMAPi MF_00163. Pep_deformylase.
InterProi IPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view ]
PANTHERi PTHR10458. PTHR10458. 1 hit.
Pfami PF01327. Pep_deformylase. 1 hit.
[Graphical view ]
PIRSFi PIRSF004749. Pep_def. 1 hit.
PRINTSi PR01576. PDEFORMYLASE.
SUPFAMi SSF56420. SSF56420. 1 hit.
TIGRFAMsi TIGR00079. pept_deformyl. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DC3000.

Entry informationi

Entry nameiDEF2_PSESM
AccessioniPrimary (citable) accession number: Q886I1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 27, 2003
Last sequence update: June 1, 2003
Last modified: October 1, 2014
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3