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Protein
Submitted name:

Sensor protein KdpD

Gene

kdpD

Organism
Pseudomonas syringae pv. tomato (strain DC3000)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

KinaseSAAS annotation, Transferase

Keywords - Ligandi

ATP-bindingSAAS annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-2290-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Sensor protein KdpDImported
Gene namesi
Name:kdpDImported
Ordered Locus Names:PSPTO_2245Imported
OrganismiPseudomonas syringae pv. tomato (strain DC3000)Imported
Taxonomic identifieri223283 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000002515 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei387 – 40721HelicalSequence analysisAdd
BLAST
Transmembranei413 – 43119HelicalSequence analysisAdd
BLAST
Transmembranei438 – 45619HelicalSequence analysisAdd
BLAST
Transmembranei468 – 48619HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi223283.PSPTO_2245.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2R8RX-ray2.30A/B19-243[»]
ProteinModelPortaliQ883V3.
SMRiQ883V3. Positions 18-226.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ883V3.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini660 – 877218Histidine kinaseInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105C08. Bacteria.
COG2205. LUCA.
HOGENOMiHOG000082933.
KOiK07646.
OMAiADWAWQH.
OrthoDBiEOG6G4VQG.
PhylomeDBiQ883V3.

Family and domain databases

Gene3Di1.10.287.130. 1 hit.
3.30.450.40. 1 hit.
3.30.565.10. 1 hit.
3.40.50.300. 1 hit.
3.40.50.620. 1 hit.
InterProiIPR003018. GAF.
IPR029016. GAF_dom-like.
IPR003594. HATPase_C.
IPR005467. His_kinase_dom.
IPR003661. HisK_dim/P.
IPR025201. KdpD_TM.
IPR027417. P-loop_NTPase.
IPR014729. Rossmann-like_a/b/a_fold.
IPR004358. Sig_transdc_His_kin-like_C.
IPR003852. Sig_transdc_His_kinase_KdpD_N.
IPR006016. UspA.
[Graphical view]
PfamiPF13493. DUF4118. 1 hit.
PF02518. HATPase_c. 1 hit.
PF00512. HisKA. 1 hit.
PF02702. KdpD. 1 hit.
PF00582. Usp. 1 hit.
[Graphical view]
PRINTSiPR00344. BCTRLSENSOR.
SMARTiSM00065. GAF. 1 hit.
SM00387. HATPase_c. 1 hit.
SM00388. HisKA. 1 hit.
[Graphical view]
SUPFAMiSSF47384. SSF47384. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF55781. SSF55781. 1 hit.
SSF55874. SSF55874. 1 hit.
PROSITEiPS50109. HIS_KIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q883V3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDSGRADAL LAQLPREGRG RLKVFLGAAP GVGKTYAMLQ AAHAQLRQGV
60 70 80 90 100
RVMAGVVETH GRAETEALLN GLPQQPLLRT EYRGMTLEEM DLDALLKAAP
110 120 130 140 150
SLVLVDELAH TNAPGSRHTK RWQDIQELLA AGIDVYTTVN VQHLESLNDQ
160 170 180 190 200
VRGITGVQVR ETLPDWVLQE AFDLVLIDLP PRELLERLRD GKVYVPEQAR
210 220 230 240 250
AAIDAFFTQT NLTALREMAM QTAAAQVDND LAQGYRQLGQ SAPAVRGRML
260 270 280 290 300
VGIDGDMHAE RLVRHASRVA QRRHLPWSAV HVDDGQTLDE QSRARLQNAQ
310 320 330 340 350
QLAERLGGEA VSLRAGEVAR TLVQHAIERR ASVVLVGQSR RHWRRRVFGG
360 370 380 390 400
GVAARLLREG HGLEISVLDD SEELPDQPPR ARPAREVVWF DYGLAFVATL
410 420 430 440 450
IASLVAWGVA GVLALPNISL IFLAAVLLVA VRSSMGPALA CAGLSFLAYD
460 470 480 490 500
FLFIPPSFSL NIQREEDVLT LLFFLLMSAL TGKLAARQRR QLQALRDTQE
510 520 530 540 550
QTSELLDLSR KMTAATDRKA VLNAAEQHFS GWKELYLCLV DRDTQGGLVV
560 570 580 590 600
ETGGPLTFSE AERAAADWAW QHDQPAGSGT GTLPSGRWWW WPITAEEGPL
610 620 630 640 650
ALLGVCAREG QSFTDQHRRL LAALTQPLAQ ALARAQLAQE LEAARLHGET
660 670 680 690 700
EQLRSALLAS VSHDLRTPLT SMRGSIDSLL ALGEAIALED RRELLEGTRD
710 720 730 740 750
EAERLDRYIQ NLLDMTRLGH GALKLARDWV SPADIVGSAL NRLRAVLTPL
760 770 780 790 800
QVSTQVTGDL PLLYVHAALI EQALVNVLEN AARFSPLGGR LQVTAGVVDS
810 820 830 840 850
ELFFSVSDEG PGIPEDERAK IFDMFYTAAR GDRGGQGTGL GLAICQGMIG
860 870 880
AHGGRLTVEE GIDGLGTRIT LFLPLQAQPD AEMEEPA
Length:887
Mass (Da):96,814
Last modified:June 1, 2003 - v1
Checksum:iB45A5C89EE8B6D69
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO55761.1.
RefSeqiNP_792066.1. NC_004578.1.
WP_011103913.1. NC_004578.1.

Genome annotation databases

EnsemblBacteriaiAAO55761; AAO55761; PSPTO_2245.
GeneIDi1183896.
KEGGipst:PSPTO_2245.
PATRICi19995776. VBIPseSyr93040_2276.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO55761.1.
RefSeqiNP_792066.1. NC_004578.1.
WP_011103913.1. NC_004578.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2R8RX-ray2.30A/B19-243[»]
ProteinModelPortaliQ883V3.
SMRiQ883V3. Positions 18-226.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi223283.PSPTO_2245.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO55761; AAO55761; PSPTO_2245.
GeneIDi1183896.
KEGGipst:PSPTO_2245.
PATRICi19995776. VBIPseSyr93040_2276.

Phylogenomic databases

eggNOGiENOG4105C08. Bacteria.
COG2205. LUCA.
HOGENOMiHOG000082933.
KOiK07646.
OMAiADWAWQH.
OrthoDBiEOG6G4VQG.
PhylomeDBiQ883V3.

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-2290-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ883V3.

Family and domain databases

Gene3Di1.10.287.130. 1 hit.
3.30.450.40. 1 hit.
3.30.565.10. 1 hit.
3.40.50.300. 1 hit.
3.40.50.620. 1 hit.
InterProiIPR003018. GAF.
IPR029016. GAF_dom-like.
IPR003594. HATPase_C.
IPR005467. His_kinase_dom.
IPR003661. HisK_dim/P.
IPR025201. KdpD_TM.
IPR027417. P-loop_NTPase.
IPR014729. Rossmann-like_a/b/a_fold.
IPR004358. Sig_transdc_His_kin-like_C.
IPR003852. Sig_transdc_His_kinase_KdpD_N.
IPR006016. UspA.
[Graphical view]
PfamiPF13493. DUF4118. 1 hit.
PF02518. HATPase_c. 1 hit.
PF00512. HisKA. 1 hit.
PF02702. KdpD. 1 hit.
PF00582. Usp. 1 hit.
[Graphical view]
PRINTSiPR00344. BCTRLSENSOR.
SMARTiSM00065. GAF. 1 hit.
SM00387. HATPase_c. 1 hit.
SM00388. HisKA. 1 hit.
[Graphical view]
SUPFAMiSSF47384. SSF47384. 1 hit.
SSF52540. SSF52540. 1 hit.
SSF55781. SSF55781. 1 hit.
SSF55874. SSF55874. 1 hit.
PROSITEiPS50109. HIS_KIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DC3000Imported.
  2. "Crystal structure of the N-terminal region (19..243) of sensor protein KdpD from Pseudomonas syringae pv. tomato str. DC3000."
    Nocek B., Mulligan R., Moy S., Joachimiak A.
    Submitted (SEP-2007) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS) OF 19-243.

Entry informationi

Entry nameiQ883V3_PSESM
AccessioniPrimary (citable) accession number: Q883V3
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: May 11, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.