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Protein
Submitted name:

DNA ligase, ATP-dependent, putative

Gene

PSPTO_3464

Organism
Pseudomonas syringae pv. tomato (strain DC3000)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-3521-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase, ATP-dependent, putativeImported
Gene namesi
Ordered Locus Names:PSPTO_3464Imported
OrganismiPseudomonas syringae pv. tomato (strain DC3000)Imported
Taxonomic identifieri223283 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000002515 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi223283.PSPTO_3464.

Structurei

3D structure databases

ProteinModelPortaliQ87ZG5.
SMRiQ87ZG5. Positions 555-846.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiYARKRDF.
OrthoDBiEOG661H49.
PhylomeDBiQ87ZG5.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q87ZG5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKPASEYTR KRNFDVTSEP LESKRKGKAR SGALSFVIQK HDARNLHYDF
60 70 80 90 100
RLELDGTLKS WAVPKGPSLD PKQKRLAVHV EDHPLDYAAF EGSIPKGQYG
110 120 130 140 150
GGDVIVWDRG IWQPHGDPRK TYEDGKLKFT LIGEKLSGEW ALVRTRLKGS
160 170 180 190 200
GSKEQWLLIK EKDDIARPAA EYDITEAQPQ SVISGAHVGA GRSAPAKPKA
210 220 230 240 250
KAVEAKPARK PAPKKAKAVF PDTFAPQLAT LVDAPPAGDW LYEIKFDGYR
260 270 280 290 300
MLTRIQNDEV RLFTRNGNDW TDQLPELTKA LKGLKLQDSW FDGEVVVLDE
310 320 330 340 350
QGLPDFQGLQ NAFDEGHSKN IFYYLFDMPF LSGEDLREVP LEQRRDALKQ
360 370 380 390 400
VLGSQRSRLL RYSDAFQAGH QDIVASAAAM GLEGVIGKRA GSAYVGKRNA
410 420 430 440 450
DWIKLKCRLR QEFVIVGYTA PQGSRSAFGA LLLAVNDDAQ GLVYAGRVGT
460 470 480 490 500
GFTEATLKHV HKQLKPLHRE ESPLAKKLTS AQARGVQWVE PTLVCEAEFA
510 520 530 540 550
QWTREGIVRQ AAFFGLRGDK PAGDVVREDA QPAEAASVTP EPSRQPGKKT
560 570 580 590 600
ARGKVDVAGT GISHPQRVID STTGTKKIEL AQFYESIADW ILPYLNKRPV
610 620 630 640 650
ALLRCPEGID GEQFFQKHAE HLAIPHIRQL DRALDPGHAA LMEIDSVQAL
660 670 680 690 700
VGAAQMGAIE LHTWGATRDR IETPDHFVLD LDPDPALPWR SMIEATQMVL
710 720 730 740 750
AVLEELGLEA FLKTSGGKGM HIIVPLARQA EWDTVKAFAK AIAEFISRQL
760 770 780 790 800
PERFTATMGP KNRVGKIFID YLRNSRGGST VTAYSVRARP GLPVSVPIAL
810 820 830 840 850
HELTGLTSSA QWDITNLEQR LSQLKSDPWA GYSNRRKITQ KMWKQLGAKQ

P
Length:851
Mass (Da):94,338
Last modified:June 1, 2003 - v1
Checksum:iBFDDFED84CD4153C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO56939.1.
RefSeqiNP_793244.1. NC_004578.1.
WP_011104572.1. NC_004578.1.

Genome annotation databases

EnsemblBacteriaiAAO56939; AAO56939; PSPTO_3464.
GeneIDi1185129.
KEGGipst:PSPTO_3464.
PATRICi19998347. VBIPseSyr93040_3545.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO56939.1.
RefSeqiNP_793244.1. NC_004578.1.
WP_011104572.1. NC_004578.1.

3D structure databases

ProteinModelPortaliQ87ZG5.
SMRiQ87ZG5. Positions 555-846.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi223283.PSPTO_3464.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO56939; AAO56939; PSPTO_3464.
GeneIDi1185129.
KEGGipst:PSPTO_3464.
PATRICi19998347. VBIPseSyr93040_3545.

Phylogenomic databases

eggNOGiCOG3285.
HOGENOMiHOG000222509.
KOiK01971.
OMAiYARKRDF.
OrthoDBiEOG661H49.
PhylomeDBiQ87ZG5.

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-3521-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR002755. DNA_primase_S.
IPR014146. LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol_dom.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DC3000Imported.

Entry informationi

Entry nameiQ87ZG5_PSESM
AccessioniPrimary (citable) accession number: Q87ZG5
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: July 22, 2015
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.