Q87ZG5 (Q87ZG5_PSESM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase, ATP-dependent, putative EMBL AAO56939.1

Gene names

Ordered Locus Names:

PSPTO_3464 EMBL AAO56939.1

Organism

Pseudomonas syringae pv. tomato (strain DC3000) [Complete proteome] [HAMAP] EMBL AAO56939.1

Taxonomic identifier

223283 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas syringae group › Pseudomonas syringae group genomosp. 3 › Pseudomonas syringae pv. tomato

Protein attributes

Sequence length	851 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AAO56939.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro DNA primase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q87ZG5 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: BFDDFED84CD4153C	FASTA	851	94,338
	10 20 30 40 50 60 MVKPASEYTR KRNFDVTSEP LESKRKGKAR SGALSFVIQK HDARNLHYDF RLELDGTLKS 70 80 90 100 110 120 WAVPKGPSLD PKQKRLAVHV EDHPLDYAAF EGSIPKGQYG GGDVIVWDRG IWQPHGDPRK 130 140 150 160 170 180 TYEDGKLKFT LIGEKLSGEW ALVRTRLKGS GSKEQWLLIK EKDDIARPAA EYDITEAQPQ 190 200 210 220 230 240 SVISGAHVGA GRSAPAKPKA KAVEAKPARK PAPKKAKAVF PDTFAPQLAT LVDAPPAGDW 250 260 270 280 290 300 LYEIKFDGYR MLTRIQNDEV RLFTRNGNDW TDQLPELTKA LKGLKLQDSW FDGEVVVLDE 310 320 330 340 350 360 QGLPDFQGLQ NAFDEGHSKN IFYYLFDMPF LSGEDLREVP LEQRRDALKQ VLGSQRSRLL 370 380 390 400 410 420 RYSDAFQAGH QDIVASAAAM GLEGVIGKRA GSAYVGKRNA DWIKLKCRLR QEFVIVGYTA 430 440 450 460 470 480 PQGSRSAFGA LLLAVNDDAQ GLVYAGRVGT GFTEATLKHV HKQLKPLHRE ESPLAKKLTS 490 500 510 520 530 540 AQARGVQWVE PTLVCEAEFA QWTREGIVRQ AAFFGLRGDK PAGDVVREDA QPAEAASVTP 550 560 570 580 590 600 EPSRQPGKKT ARGKVDVAGT GISHPQRVID STTGTKKIEL AQFYESIADW ILPYLNKRPV 610 620 630 640 650 660 ALLRCPEGID GEQFFQKHAE HLAIPHIRQL DRALDPGHAA LMEIDSVQAL VGAAQMGAIE 670 680 690 700 710 720 LHTWGATRDR IETPDHFVLD LDPDPALPWR SMIEATQMVL AVLEELGLEA FLKTSGGKGM 730 740 750 760 770 780 HIIVPLARQA EWDTVKAFAK AIAEFISRQL PERFTATMGP KNRVGKIFID YLRNSRGGST 790 800 810 820 830 840 VTAYSVRARP GLPVSVPIAL HELTGLTSSA QWDITNLEQR LSQLKSDPWA GYSNRRKITQ 850 KMWKQLGAKQ P

References

[1]

"The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000." Buell C.R., Joardar V., Lindeberg M., Selengut J., Paulsen I.T., Gwinn M.L., Dodson R.J., DeBoy R.T., Durkin A.S., Kolonay J.F., Madupu R., Daugherty S.C., Brinkac L.M., Beanan M.J., Haft D.H., Nelson W.C., Davidsen T.M., Zafar N. , Zhou L., Liu J., Yuan Q., Khouri H.M., Fedorova N.B., Tran B., Russell D., Berry K.J., Utterback T.R., Van Aken S.E., Feldblyum T.V., D'Ascenzo M., Deng W.-L., Ramos A.R., Alfano J.R., Cartinhour S., Chatterjee A.K., Delaney T.P., Lazarowitz S.G., Martin G.B., Schneider D.J., Tang X., Bender C.L., White O., Fraser C.M., Collmer A. Proc. Natl. Acad. Sci. U.S.A. 100:10181-10186(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DC3000 EMBL AAO56939.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE016853 Genomic DNA. Translation: AAO56939.1.
RefSeq	NP_793244.1. NC_004578.1.
3D structure databases
ProteinModelPortal	Q87ZG5.
SMR	Q87ZG5. Positions 555-846.
ModBase	Search...
Protein-protein interaction databases
STRING	223283.PSPTO_3464.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAO56939; AAO56939; PSPTO_3464.
GeneID	1185129.
KEGG	pst:PSPTO_3464.
PATRIC	19998347. VBIPseSyr93040_3545.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG3285.
HOGENOM	HOG000222509.
KO	K01971.
OMA	LKSDPWA.
ProtClustDB	PRK05972.
Enzyme and pathway databases
BioCyc	PSYR223283:GJIX-3521-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR002755. DNA_primase_S. IPR014144. LigD_PE_domain. IPR014145. LigD_pol. IPR012340. NA-bd_OB-fold. IPR014143. NHEJ_ligase_prk. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF01896. DNA_primase_S. 1 hit. PF13298. LigD_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02777. LigD_PE_dom. 1 hit. TIGR02778. ligD_pol. 1 hit. TIGR02779. NHEJ_ligase_lig. 1 hit. TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q87ZG5_PSESM

Accession

Primary (citable) accession number: Q87ZG5

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	June 1, 2003
Last modified:	May 1, 2013
This is version 69 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)