Q87XP1 (Q87XP1_PSESM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA ligase, ATP-dependent EMBL AAO57591.1

Gene names

Ordered Locus Names:

PSPTO_4135 EMBL AAO57591.1

Organism

Pseudomonas syringae pv. tomato (strain DC3000) [Complete proteome] [HAMAP] EMBL AAO57591.1

Taxonomic identifier

223283 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas › Pseudomonas syringae group › Pseudomonas syringae group genomosp. 3 › Pseudomonas syringae pv. tomato

Protein attributes

Sequence length	571 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL AAO57591.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q87XP1 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: CFEB9CCAE10242F2	FASTA	571	64,128
	10 20 30 40 50 60 MKAFAELYAQ LDATTSSNAK LAAMRDYFEK AAAEDAAWAV YFLSGGRPRQ LVPTRVLREQ 70 80 90 100 110 120 AMTLASLPEW LFEESYQAVG DLAETLSLLL PQADHSNDEG LATWMEDKLL PLRGLPPEEL 130 140 150 160 170 180 AARLPMFWSQ LDRSSLMVCI KLITGSFRVG VSKLLVTRAL AALADIDSKR VAQRLVGYTD 190 200 210 220 230 240 LSHRPSAERY LKLIAPESED EHAQRGGQPY PFFLAHSLQQ PADQFETLLG PAENWQVEWK 250 260 270 280 290 300 WDGIRAQLVK RDGRLWIWSR GEELVTDRFP ELHSLAQCLP DGTVIDGEIV VWKAPDINPD 310 320 330 340 350 360 ISHDSDAAFA LDNDAPNAAP SVQPFALLQQ RIGRKTLGKK ILTDIPVVVL AYDLLEWQGA 370 380 390 400 410 420 DWRSRPQHER RTQLETLIDS CQSEVLMPSP VLTGKDWLDL ATQREASRSL GVEGMMLKAR 430 440 450 460 470 480 DSLYGVGRTK DMGVWWKWKI DPFSVDAVLI YAQRGHGRRA SLYSDYTFAV WDGPPEASER 490 500 510 520 530 540 TLVPFAKAYS GLTDEEMRKV DAIVRKTTVE KFGPVSSVTP TLVFELGFEG IALSKRHKSG 550 560 570 IAVRFPRMLR WRQDKPVAEA DSLTTLQDLL N

References

[1]

"The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000." Buell C.R., Joardar V., Lindeberg M., Selengut J., Paulsen I.T., Gwinn M.L., Dodson R.J., DeBoy R.T., Durkin A.S., Kolonay J.F., Madupu R., Daugherty S.C., Brinkac L.M., Beanan M.J., Haft D.H., Nelson W.C., Davidsen T.M., Zafar N. , Zhou L., Liu J., Yuan Q., Khouri H.M., Fedorova N.B., Tran B., Russell D., Berry K.J., Utterback T.R., Van Aken S.E., Feldblyum T.V., D'Ascenzo M., Deng W.-L., Ramos A.R., Alfano J.R., Cartinhour S., Chatterjee A.K., Delaney T.P., Lazarowitz S.G., Martin G.B., Schneider D.J., Tang X., Bender C.L., White O., Fraser C.M., Collmer A. Proc. Natl. Acad. Sci. U.S.A. 100:10181-10186(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DC3000 EMBL AAO57591.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE016853 Genomic DNA. Translation: AAO57591.1.
RefSeq	NP_793896.1. NC_004578.1.
3D structure databases
ProteinModelPortal	Q87XP1.
ModBase	Search...
Protein-protein interaction databases
STRING	223283.PSPTO_4135.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAO57591; AAO57591; PSPTO_4135.
GeneID	1185815.
KEGG	pst:PSPTO_4135.
PATRIC	19999767. VBIPseSyr93040_4245.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG1793.
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
ProtClustDB	PRK09247.
Enzyme and pathway databases
BioCyc	PSYR223283:GJIX-4199-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS00697. DNA_LIGASE_A1. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q87XP1_PSESM

Accession

Primary (citable) accession number: Q87XP1

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	June 1, 2003
Last modified:	May 1, 2013
This is version 68 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)