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Q87XP1

- Q87XP1_PSESM

UniProt

Q87XP1 - Q87XP1_PSESM

Protein
Submitted name:

DNA ligase, ATP-dependent

Gene

PSPTO_4135

Organism
Pseudomonas syringae pv. tomato (strain DC3000)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 75 (01 Oct 2014)
      Sequence version 1 (01 Jun 2003)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPSYR223283:GJIX-4199-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase, ATP-dependentImported
    Gene namesi
    Ordered Locus Names:PSPTO_4135Imported
    OrganismiPseudomonas syringae pv. tomato (strain DC3000)Imported
    Taxonomic identifieri223283 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000002515: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi223283.PSPTO_4135.

    Structurei

    3D structure databases

    ProteinModelPortaliQ87XP1.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiRVWLWSR.
    OrthoDBiEOG6Q8HXT.
    PhylomeDBiQ87XP1.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q87XP1-1 [UniParc]FASTAAdd to Basket

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    MKAFAELYAQ LDATTSSNAK LAAMRDYFEK AAAEDAAWAV YFLSGGRPRQ    50
    LVPTRVLREQ AMTLASLPEW LFEESYQAVG DLAETLSLLL PQADHSNDEG 100
    LATWMEDKLL PLRGLPPEEL AARLPMFWSQ LDRSSLMVCI KLITGSFRVG 150
    VSKLLVTRAL AALADIDSKR VAQRLVGYTD LSHRPSAERY LKLIAPESED 200
    EHAQRGGQPY PFFLAHSLQQ PADQFETLLG PAENWQVEWK WDGIRAQLVK 250
    RDGRLWIWSR GEELVTDRFP ELHSLAQCLP DGTVIDGEIV VWKAPDINPD 300
    ISHDSDAAFA LDNDAPNAAP SVQPFALLQQ RIGRKTLGKK ILTDIPVVVL 350
    AYDLLEWQGA DWRSRPQHER RTQLETLIDS CQSEVLMPSP VLTGKDWLDL 400
    ATQREASRSL GVEGMMLKAR DSLYGVGRTK DMGVWWKWKI DPFSVDAVLI 450
    YAQRGHGRRA SLYSDYTFAV WDGPPEASER TLVPFAKAYS GLTDEEMRKV 500
    DAIVRKTTVE KFGPVSSVTP TLVFELGFEG IALSKRHKSG IAVRFPRMLR 550
    WRQDKPVAEA DSLTTLQDLL N 571
    Length:571
    Mass (Da):64,128
    Last modified:June 1, 2003 - v1
    Checksum:iCFEB9CCAE10242F2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE016853 Genomic DNA. Translation: AAO57591.1.
    RefSeqiNP_793896.1. NC_004578.1.

    Genome annotation databases

    EnsemblBacteriaiAAO57591; AAO57591; PSPTO_4135.
    GeneIDi1185815.
    KEGGipst:PSPTO_4135.
    PATRICi19999767. VBIPseSyr93040_4245.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE016853 Genomic DNA. Translation: AAO57591.1 .
    RefSeqi NP_793896.1. NC_004578.1.

    3D structure databases

    ProteinModelPortali Q87XP1.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 223283.PSPTO_4135.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAO57591 ; AAO57591 ; PSPTO_4135 .
    GeneIDi 1185815.
    KEGGi pst:PSPTO_4135.
    PATRICi 19999767. VBIPseSyr93040_4245.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi RVWLWSR.
    OrthoDBi EOG6Q8HXT.
    PhylomeDBi Q87XP1.

    Enzyme and pathway databases

    BioCyci PSYR223283:GJIX-4199-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DC3000Imported.

    Entry informationi

    Entry nameiQ87XP1_PSESM
    AccessioniPrimary (citable) accession number: Q87XP1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 1, 2003
    Last sequence update: June 1, 2003
    Last modified: October 1, 2014
    This is version 75 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3