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Protein

UPF0307 protein PSPTO_4464

Gene

PSPTO_4464

Organism
Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-4454-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0307 protein PSPTO_4464UniRule annotation
Gene namesi
Ordered Locus Names:PSPTO_4464
OrganismiPseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
Taxonomic identifieri223283 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000002515 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002082251 – 173UPF0307 protein PSPTO_4464Add BLAST173

Interactioni

Protein-protein interaction databases

STRINGi223283.PSPTO_4464.

Structurei

Secondary structure

1173
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi23 – 32Combined sources10
Helixi37 – 40Combined sources4
Helixi47 – 55Combined sources9
Helixi56 – 58Combined sources3
Helixi62 – 75Combined sources14
Helixi76 – 78Combined sources3
Helixi81 – 114Combined sources34
Helixi117 – 126Combined sources10
Helixi132 – 147Combined sources16
Helixi153 – 166Combined sources14

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2P0TX-ray2.19A1-173[»]
ProteinModelPortaliQ87WS9.
SMRiQ87WS9.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ87WS9.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0307 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105N42. Bacteria.
COG3028. LUCA.
HOGENOMiHOG000013875.
KOiK09889.
OMAiSRQYNER.
OrthoDBiPOG091H05SG.
PhylomeDBiQ87WS9.

Family and domain databases

Gene3Di1.10.60.30. 2 hits.
HAMAPiMF_00765. UPF0307. 1 hit.
InterProiIPR023153. PSPTO4464-like_domain.
IPR006839. Ribosome-assoc_YjgA.
[Graphical view]
PfamiPF04751. DUF615. 1 hit.
[Graphical view]
PIRSFiPIRSF016183. UCP016183. 1 hit.

Sequencei

Sequence statusi: Complete.

Q87WS9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVDSYDDSLD GEKSKTQVKR ELHALVDLGE RLTTLKADVL AKLPLTDALR
60 70 80 90 100
KALAEAPKHT ANIARKRHIL FIGKLMRDQD QEAILVLLDQ LDASTRQYNE
110 120 130 140 150
RFHNLERWRD RLIAGDDADL EKFVIEYPDA DRQQLRSLIR QAQHEVARNK
160 170
PPATSRKIFK YIRELDELQR GLR
Length:173
Mass (Da):20,137
Last modified:June 1, 2003 - v1
Checksum:i00D6C30B5191A951
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO57913.1.
RefSeqiNP_794218.1. NC_004578.1.
WP_003377535.1. NC_004578.1.

Genome annotation databases

EnsemblBacteriaiAAO57913; AAO57913; PSPTO_4464.
GeneIDi1186145.
KEGGipst:PSPTO_4464.
PATRICi20000438. VBIPseSyr93040_4579.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO57913.1.
RefSeqiNP_794218.1. NC_004578.1.
WP_003377535.1. NC_004578.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2P0TX-ray2.19A1-173[»]
ProteinModelPortaliQ87WS9.
SMRiQ87WS9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi223283.PSPTO_4464.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO57913; AAO57913; PSPTO_4464.
GeneIDi1186145.
KEGGipst:PSPTO_4464.
PATRICi20000438. VBIPseSyr93040_4579.

Phylogenomic databases

eggNOGiENOG4105N42. Bacteria.
COG3028. LUCA.
HOGENOMiHOG000013875.
KOiK09889.
OMAiSRQYNER.
OrthoDBiPOG091H05SG.
PhylomeDBiQ87WS9.

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-4454-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ87WS9.

Family and domain databases

Gene3Di1.10.60.30. 2 hits.
HAMAPiMF_00765. UPF0307. 1 hit.
InterProiIPR023153. PSPTO4464-like_domain.
IPR006839. Ribosome-assoc_YjgA.
[Graphical view]
PfamiPF04751. DUF615. 1 hit.
[Graphical view]
PIRSFiPIRSF016183. UCP016183. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiY4464_PSESM
AccessioniPrimary (citable) accession number: Q87WS9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 13, 2004
Last sequence update: June 1, 2003
Last modified: November 2, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.