Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

UPF0307 protein PSPTO_4464

Gene

PSPTO_4464

Organism
Pseudomonas syringae pv. tomato (strain DC3000)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-4530-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0307 protein PSPTO_4464UniRule annotation
Gene namesi
Ordered Locus Names:PSPTO_4464
OrganismiPseudomonas syringae pv. tomato (strain DC3000)
Taxonomic identifieri223283 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000002515 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 173173UPF0307 protein PSPTO_4464PRO_0000208225Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi223283.PSPTO_4464.

Structurei

Secondary structure

1
173
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi23 – 3210Combined sources
Helixi37 – 404Combined sources
Helixi47 – 559Combined sources
Helixi56 – 583Combined sources
Helixi62 – 7514Combined sources
Helixi76 – 783Combined sources
Helixi81 – 11434Combined sources
Helixi117 – 12610Combined sources
Helixi132 – 14716Combined sources
Helixi153 – 16614Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2P0TX-ray2.19A1-173[»]
ProteinModelPortaliQ87WS9.
SMRiQ87WS9. Positions 22-169.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ87WS9.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0307 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105N42. Bacteria.
COG3028. LUCA.
HOGENOMiHOG000013875.
KOiK09889.
OMAiHLIERWR.
OrthoDBiEOG6RJV5H.
PhylomeDBiQ87WS9.

Family and domain databases

Gene3Di1.10.60.30. 2 hits.
HAMAPiMF_00765. UPF0307.
InterProiIPR023153. PSPTO4464-like_domain.
IPR006839. Ribosome-assoc_YjgA.
[Graphical view]
PfamiPF04751. DUF615. 1 hit.
[Graphical view]
PIRSFiPIRSF016183. UCP016183. 1 hit.

Sequencei

Sequence statusi: Complete.

Q87WS9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVDSYDDSLD GEKSKTQVKR ELHALVDLGE RLTTLKADVL AKLPLTDALR
60 70 80 90 100
KALAEAPKHT ANIARKRHIL FIGKLMRDQD QEAILVLLDQ LDASTRQYNE
110 120 130 140 150
RFHNLERWRD RLIAGDDADL EKFVIEYPDA DRQQLRSLIR QAQHEVARNK
160 170
PPATSRKIFK YIRELDELQR GLR
Length:173
Mass (Da):20,137
Last modified:June 1, 2003 - v1
Checksum:i00D6C30B5191A951
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO57913.1.
RefSeqiNP_794218.1. NC_004578.1.
WP_003377535.1. NC_004578.1.

Genome annotation databases

EnsemblBacteriaiAAO57913; AAO57913; PSPTO_4464.
GeneIDi1186145.
KEGGipst:PSPTO_4464.
PATRICi20000438. VBIPseSyr93040_4579.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO57913.1.
RefSeqiNP_794218.1. NC_004578.1.
WP_003377535.1. NC_004578.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2P0TX-ray2.19A1-173[»]
ProteinModelPortaliQ87WS9.
SMRiQ87WS9. Positions 22-169.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi223283.PSPTO_4464.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO57913; AAO57913; PSPTO_4464.
GeneIDi1186145.
KEGGipst:PSPTO_4464.
PATRICi20000438. VBIPseSyr93040_4579.

Phylogenomic databases

eggNOGiENOG4105N42. Bacteria.
COG3028. LUCA.
HOGENOMiHOG000013875.
KOiK09889.
OMAiHLIERWR.
OrthoDBiEOG6RJV5H.
PhylomeDBiQ87WS9.

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-4530-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ87WS9.

Family and domain databases

Gene3Di1.10.60.30. 2 hits.
HAMAPiMF_00765. UPF0307.
InterProiIPR023153. PSPTO4464-like_domain.
IPR006839. Ribosome-assoc_YjgA.
[Graphical view]
PfamiPF04751. DUF615. 1 hit.
[Graphical view]
PIRSFiPIRSF016183. UCP016183. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DC3000.

Entry informationi

Entry nameiY4464_PSESM
AccessioniPrimary (citable) accession number: Q87WS9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 13, 2004
Last sequence update: June 1, 2003
Last modified: December 9, 2015
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.