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Q87VU3 (SPEA_PSESM) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 76. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Biosynthetic arginine decarboxylase

Short name=ADC
EC=4.1.1.19
Gene names
Name:speA
Ordered Locus Names:PSPTO_4842
OrganismPseudomonas syringae pv. tomato (strain DC3000) [Complete proteome] [HAMAP]
Taxonomic identifier223283 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length637 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the biosynthesis of agmatine from arginine By similarity. HAMAP-Rule MF_01417

Catalytic activity

L-arginine = agmatine + CO2. HAMAP-Rule MF_01417

Cofactor

Magnesium By similarity. HAMAP-Rule MF_01417

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01417

Sequence similarities

Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 637637Biosynthetic arginine decarboxylase HAMAP-Rule MF_01417
PRO_0000149973

Regions

Region290 – 30011Substrate-binding Potential

Amino acid modifications

Modified residue1101N6-(pyridoxal phosphate)lysine By similarity

Sequences

Sequence LengthMass (Da)Tools
Q87VU3 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: F564FFEBD5494FCA

FASTA63771,379
        10         20         30         40         50         60 
MSVRRTRKDD GSQWTVADSR SVYGIRHWGA GYFAINEAGR VEVRPNGPDS SPIDLYEQVD 

        70         80         90        100        110        120 
NLRKSGLSLP LLVRFPDILQ DRVRQLTGAF DSNIARLEYQ SQYTALYPIK VNQQEAVVEN 

       130        140        150        160        170        180 
IIATQNVSIG LEAGSKPELM AVLALAPKGG TIVCNGYKDR EFIRLALMGQ KLGHNVFIVI 

       190        200        210        220        230        240 
EKESEVELVI EEAAELKVAP QVGLRVRLSS LASSKWADTG GEKSKFGLSA AQLLSVVERF 

       250        260        270        280        290        300 
RKAGLDQGIR LLHFHMGSQI ANLADYQHGF KEAIRYYGEL RKLGLPVDYI DVGGGLGVDY 

       310        320        330        340        350        360 
DGTHSRNASS INYDMDDYAG VVVGMLKEFC DAQSLPHPHI FSESGRSLTA HHAMLVVQVT 

       370        380        390        400        410        420 
DVEKHNDEVP KIADKESLPE TVQWLVDLLG PTDIEMVTET YWRATHYMSD IATQYADGKI 

       430        440        450        460        470        480 
SLAEKALGEQ CYFAVCRRLY NSLKARQRSH RQVLDELNDK LADKYICNFS VFQSLPDTWA 

       490        500        510        520        530        540 
IGQVLPILPL HRLDEEPVRR AVLQDLTCDS DGKIKQYVDE QSIETSMPVH SLNEGEDYLL 

       550        560        570        580        590        600 
GIFLVGAYQE ILGDMHNLFG DTDSVNIYQN PDGSVYHAGI ETHDTIEDML RYVHLSPEEL 

       610        620        630 
MTHYRDKVAS AKITPRERTY FLDALRLGLT RSSYLSS 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE016853 Genomic DNA. Translation: AAO58271.1.
RefSeqNP_794576.1. NC_004578.1.

3D structure databases

ProteinModelPortalQ87VU3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING223283.PSPTO_4842.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAO58271; AAO58271; PSPTO_4842.
GeneID1186525.
KEGGpst:PSPTO_4842.
PATRIC20001190. VBIPseSyr93040_4953.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1166.
HOGENOMHOG000029191.
KOK01585.
OMAIDHYVDG.
OrthoDBEOG676Z0R.
PhylomeDBQ87VU3.

Enzyme and pathway databases

BioCycPSYR223283:GJIX-4908-MONOMER.

Family and domain databases

Gene3D2.40.37.10. 2 hits.
3.20.20.10. 1 hit.
HAMAPMF_01417. SpeA.
InterProIPR009006. Ala_racemase/Decarboxylase_C.
IPR002985. Arg_decrbxlase.
IPR022643. De-COase2_C.
IPR022657. De-COase2_CS.
IPR022644. De-COase2_N.
IPR000183. Orn/DAP/Arg_de-COase.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamPF02784. Orn_Arg_deC_N. 1 hit.
PF00278. Orn_DAP_Arg_deC. 1 hit.
[Graphical view]
PIRSFPIRSF001336. Arg_decrbxlase. 1 hit.
PRINTSPR01180. ARGDCRBXLASE.
PR01179. ODADCRBXLASE.
SUPFAMSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsTIGR01273. speA. 1 hit.
PROSITEPS00879. ODR_DC_2_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSPEA_PSESM
AccessionPrimary (citable) accession number: Q87VU3
Entry history
Integrated into UniProtKB/Swiss-Prot: March 29, 2004
Last sequence update: June 1, 2003
Last modified: July 9, 2014
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families