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Q87V03 (SYR_PSESM) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 75. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Arginine--tRNA ligase

EC=6.1.1.19
Alternative name(s):
Arginyl-tRNA synthetase
Short name=ArgRS
Gene names
Name:argS
Ordered Locus Names:PSPTO_5138
OrganismPseudomonas syringae pv. tomato (strain DC3000) [Complete proteome] [HAMAP]
Taxonomic identifier223283 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length578 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg). HAMAP-Rule MF_00123

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00123

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00123.

Sequence similarities

Belongs to the class-I aminoacyl-tRNA synthetase family.

Ontologies

Keywords
   Biological processProtein biosynthesis
   Cellular componentCytoplasm
   LigandATP-binding
Nucleotide-binding
   Molecular functionAminoacyl-tRNA synthetase
Ligase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processarginyl-tRNA aminoacylation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

arginine-tRNA ligase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 578578Arginine--tRNA ligase HAMAP-Rule MF_00123
PRO_0000151594

Regions

Motif127 – 13711"HIGH" region HAMAP-Rule MF_00123

Sequences

Sequence LengthMass (Da)Tools
Q87V03 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 7DA9D2D7377CDB07

FASTA57863,640
        10         20         30         40         50         60 
MKDTIRQLIQ QALTRLVTEG VLPEGLTPAI QVENARDKTH GDFASNIAMM LAKPAGMKPR 

        70         80         90        100        110        120 
DLAEKLIAAL PADEQVSKVE IAGPGFLNFF QNTAALASRL DAALSDPQLS VRKAGAAQRV 

       130        140        150        160        170        180 
VVDLSAPNLA KEMHVGHLRS TIIGDGVANV LEFLGDTVIR QNHVGDWGTQ FGMLLAYLQE 

       190        200        210        220        230        240 
KPATSDELSD LENFYRAAKQ RFDESEEFAE RARGLVVKLQ AGDAECLTLW TRFKDISLSH 

       250        260        270        280        290        300 
CQQTYERLNV KLTPADVMGE SAYNDDLANV VNDLKAAGLL VESNGAQCVF LEEFRTADDT 

       310        320        330        340        350        360 
PLPVIVQKAG GGYLYATTDL AAIRYRSKVL KADRALYFVD QRQALHFQQV FEVARRAGFV 

       370        380        390        400        410        420 
HEGMQLEHMG FGTMNGADGR PFKTRDGGTV KLIDLLDEAQ ERAYTLVKEK NPQVAEAELR 

       430        440        450        460        470        480 
SIAKAVGISA VKYADLSKHR ASDYSFNFDQ MLSFEGNTAP YLLYAYTRVA GVFRKLGTPF 

       490        500        510        520        530        540 
DASKGHIVLE APQEQELAAR LAQFNETLNN VAEKGTPHVL CAYLYDLAGL FSSFYENCPI 

       550        560        570 
LGAENPDQQQ SRLRLAALTG RTLKQGLDLL GLETLERM 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE016853 Genomic DNA. Translation: AAO58565.1.
RefSeqNP_794870.1. NC_004578.1.

3D structure databases

ProteinModelPortalQ87V03.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING223283.PSPTO_5138.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAO58565; AAO58565; PSPTO_5138.
GeneID1186823.
KEGGpst:PSPTO_5138.
PATRIC20001804. VBIPseSyr93040_5258.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0018.
HOGENOMHOG000247212.
KOK01887.
OMAMEHMGFG.
OrthoDBEOG6JB13C.
PhylomeDBQ87V03.

Enzyme and pathway databases

BioCycPSYR223283:GJIX-5205-MONOMER.

Family and domain databases

Gene3D1.10.730.10. 1 hit.
3.30.1360.70. 1 hit.
3.40.50.620. 1 hit.
HAMAPMF_00123. Arg_tRNA_synth.
InterProIPR001412. aa-tRNA-synth_I_CS.
IPR001278. Arg-tRNA-ligase.
IPR005148. Arg-tRNA-synth_N.
IPR008909. DALR_anticod-bd.
IPR014729. Rossmann-like_a/b/a_fold.
IPR009080. tRNAsynth_1a_anticodon-bd.
[Graphical view]
PANTHERPTHR11956. PTHR11956. 1 hit.
PfamPF03485. Arg_tRNA_synt_N. 1 hit.
PF05746. DALR_1. 1 hit.
PF00750. tRNA-synt_1d. 1 hit.
[Graphical view]
PRINTSPR01038. TRNASYNTHARG.
SMARTSM01016. Arg_tRNA_synt_N. 1 hit.
SM00836. DALR_1. 1 hit.
[Graphical view]
SUPFAMSSF47323. SSF47323. 1 hit.
SSF55190. SSF55190. 1 hit.
TIGRFAMsTIGR00456. argS. 1 hit.
PROSITEPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameSYR_PSESM
AccessionPrimary (citable) accession number: Q87V03
Entry history
Integrated into UniProtKB/Swiss-Prot: October 31, 2003
Last sequence update: June 1, 2003
Last modified: July 9, 2014
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Aminoacyl-tRNA synthetases

List of aminoacyl-tRNA synthetase entries