Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

UPF0317 protein PSPTO_5379

Gene

PSPTO_5379

Organism
Pseudomonas syringae pv. tomato (strain DC3000)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-5447-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0317 protein PSPTO_5379UniRule annotation
Gene namesi
Ordered Locus Names:PSPTO_5379
OrganismiPseudomonas syringae pv. tomato (strain DC3000)
Taxonomic identifieri223283 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000002515 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 268268UPF0317 protein PSPTO_5379PRO_0000217170Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi223283.PSPTO_5379.

Structurei

Secondary structure

1
268
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi8 – 2316Combined sources
Beta strandi39 – 468Combined sources
Helixi47 – 5913Combined sources
Turni61 – 633Combined sources
Beta strandi66 – 694Combined sources
Turni85 – 873Combined sources
Beta strandi88 – 903Combined sources
Beta strandi92 – 965Combined sources
Beta strandi99 – 1057Combined sources
Helixi110 – 1134Combined sources
Beta strandi115 – 1228Combined sources
Helixi129 – 1357Combined sources
Helixi140 – 1434Combined sources
Beta strandi150 – 1567Combined sources
Beta strandi166 – 17510Combined sources
Helixi176 – 1783Combined sources
Helixi179 – 1879Combined sources
Beta strandi197 – 2004Combined sources
Helixi202 – 2054Combined sources
Beta strandi214 – 2163Combined sources
Beta strandi225 – 2317Combined sources
Helixi235 – 2439Combined sources
Beta strandi246 – 2527Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2PIFX-ray2.30A/B1-268[»]
ProteinModelPortaliQ87UC6.
SMRiQ87UC6. Positions 7-263.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ87UC6.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0317 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CFM. Bacteria.
COG4336. LUCA.
HOGENOMiHOG000136024.
OMAiIRAVQIT.
OrthoDBiEOG6H7FDS.
PhylomeDBiQ87UC6.

Family and domain databases

HAMAPiMF_01830. UPF0317.
InterProiIPR009906. DUF1445.
IPR016938. UPF0317.
[Graphical view]
PfamiPF07286. DUF1445. 1 hit.
[Graphical view]
PIRSFiPIRSF029755. UCP029755. 1 hit.

Sequencei

Sequence statusi: Complete.

Q87UC6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNAFDRARQS AIAAAREARG TYRNGLVTPT AGVAPGMTQA NLIALPRDWA
60 70 80 90 100
YDFLLYAQRN PKACPILDVS DAGSPTTLLA EGSDLRTDIP MYRIWRDGKL
110 120 130 140 150
AEEVSDATQA WAEHDDMVAF LIGCSFTFET PLQEAGIEVR HITDGCNVPM
160 170 180 190 200
YRTNRACRPA GRLHGEMVVS MRPIPADRVA EASAISGRYP SVHGAPVHIG
210 220 230 240 250
EPGRLGINDL SRPDFGDAVS IKPGEVPVFW ACGVTPQAAV MASGVPFAIT
260
HSPGYMFITD VPDSTYHV
Length:268
Mass (Da):28,927
Last modified:June 1, 2003 - v1
Checksum:iEAB2B5FD5AF20A5C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO58801.1.
RefSeqiNP_795106.1. NC_004578.1.
WP_011105455.1. NC_004578.1.

Genome annotation databases

EnsemblBacteriaiAAO58801; AAO58801; PSPTO_5379.
GeneIDi1187066.
KEGGipst:PSPTO_5379.
PATRICi20002302. VBIPseSyr93040_5505.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO58801.1.
RefSeqiNP_795106.1. NC_004578.1.
WP_011105455.1. NC_004578.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2PIFX-ray2.30A/B1-268[»]
ProteinModelPortaliQ87UC6.
SMRiQ87UC6. Positions 7-263.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi223283.PSPTO_5379.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO58801; AAO58801; PSPTO_5379.
GeneIDi1187066.
KEGGipst:PSPTO_5379.
PATRICi20002302. VBIPseSyr93040_5505.

Phylogenomic databases

eggNOGiENOG4105CFM. Bacteria.
COG4336. LUCA.
HOGENOMiHOG000136024.
OMAiIRAVQIT.
OrthoDBiEOG6H7FDS.
PhylomeDBiQ87UC6.

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-5447-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ87UC6.

Family and domain databases

HAMAPiMF_01830. UPF0317.
InterProiIPR009906. DUF1445.
IPR016938. UPF0317.
[Graphical view]
PfamiPF07286. DUF1445. 1 hit.
[Graphical view]
PIRSFiPIRSF029755. UCP029755. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DC3000.
  2. "Crystal structure of UPF0317 protein PSPTO_5379 from Pseudomonas syringae pv. tomato."
    Northeast structural genomics consortium (NESG)
    Submitted (FEB-2009) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.3 ANGSTROMS).

Entry informationi

Entry nameiY5379_PSESM
AccessioniPrimary (citable) accession number: Q87UC6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2004
Last sequence update: June 1, 2003
Last modified: November 11, 2015
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.