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Protein

UPF0317 protein PSPTO_5379

Gene

PSPTO_5379

Organism
Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-5357-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0317 protein PSPTO_5379UniRule annotation
Gene namesi
Ordered Locus Names:PSPTO_5379
OrganismiPseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
Taxonomic identifieri223283 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000002515 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002171701 – 268UPF0317 protein PSPTO_5379Add BLAST268

Interactioni

Protein-protein interaction databases

STRINGi223283.PSPTO_5379.

Structurei

Secondary structure

1268
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi8 – 23Combined sources16
Beta strandi39 – 46Combined sources8
Helixi47 – 59Combined sources13
Turni61 – 63Combined sources3
Beta strandi66 – 69Combined sources4
Turni85 – 87Combined sources3
Beta strandi88 – 90Combined sources3
Beta strandi92 – 96Combined sources5
Beta strandi99 – 105Combined sources7
Helixi110 – 113Combined sources4
Beta strandi115 – 122Combined sources8
Helixi129 – 135Combined sources7
Helixi140 – 143Combined sources4
Beta strandi150 – 156Combined sources7
Beta strandi166 – 175Combined sources10
Helixi176 – 178Combined sources3
Helixi179 – 187Combined sources9
Beta strandi197 – 200Combined sources4
Helixi202 – 205Combined sources4
Beta strandi214 – 216Combined sources3
Beta strandi225 – 231Combined sources7
Helixi235 – 243Combined sources9
Beta strandi246 – 252Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2PIFX-ray2.30A/B1-268[»]
ProteinModelPortaliQ87UC6.
SMRiQ87UC6.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ87UC6.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0317 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105CFM. Bacteria.
COG4336. LUCA.
HOGENOMiHOG000136024.
OMAiIRAVQIT.
OrthoDBiPOG091H0DSR.
PhylomeDBiQ87UC6.

Family and domain databases

HAMAPiMF_01830. UPF0317. 1 hit.
InterProiIPR009906. DUF1445.
IPR016938. UPF0317.
[Graphical view]
PfamiPF07286. DUF1445. 1 hit.
[Graphical view]
PIRSFiPIRSF029755. UCP029755. 1 hit.

Sequencei

Sequence statusi: Complete.

Q87UC6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNAFDRARQS AIAAAREARG TYRNGLVTPT AGVAPGMTQA NLIALPRDWA
60 70 80 90 100
YDFLLYAQRN PKACPILDVS DAGSPTTLLA EGSDLRTDIP MYRIWRDGKL
110 120 130 140 150
AEEVSDATQA WAEHDDMVAF LIGCSFTFET PLQEAGIEVR HITDGCNVPM
160 170 180 190 200
YRTNRACRPA GRLHGEMVVS MRPIPADRVA EASAISGRYP SVHGAPVHIG
210 220 230 240 250
EPGRLGINDL SRPDFGDAVS IKPGEVPVFW ACGVTPQAAV MASGVPFAIT
260
HSPGYMFITD VPDSTYHV
Length:268
Mass (Da):28,927
Last modified:June 1, 2003 - v1
Checksum:iEAB2B5FD5AF20A5C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO58801.1.
RefSeqiNP_795106.1. NC_004578.1.
WP_011105455.1. NC_004578.1.

Genome annotation databases

EnsemblBacteriaiAAO58801; AAO58801; PSPTO_5379.
GeneIDi1187066.
KEGGipst:PSPTO_5379.
PATRICi20002302. VBIPseSyr93040_5505.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE016853 Genomic DNA. Translation: AAO58801.1.
RefSeqiNP_795106.1. NC_004578.1.
WP_011105455.1. NC_004578.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2PIFX-ray2.30A/B1-268[»]
ProteinModelPortaliQ87UC6.
SMRiQ87UC6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi223283.PSPTO_5379.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO58801; AAO58801; PSPTO_5379.
GeneIDi1187066.
KEGGipst:PSPTO_5379.
PATRICi20002302. VBIPseSyr93040_5505.

Phylogenomic databases

eggNOGiENOG4105CFM. Bacteria.
COG4336. LUCA.
HOGENOMiHOG000136024.
OMAiIRAVQIT.
OrthoDBiPOG091H0DSR.
PhylomeDBiQ87UC6.

Enzyme and pathway databases

BioCyciPSYR223283:GJIX-5357-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ87UC6.

Family and domain databases

HAMAPiMF_01830. UPF0317. 1 hit.
InterProiIPR009906. DUF1445.
IPR016938. UPF0317.
[Graphical view]
PfamiPF07286. DUF1445. 1 hit.
[Graphical view]
PIRSFiPIRSF029755. UCP029755. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiY5379_PSESM
AccessioniPrimary (citable) accession number: Q87UC6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 7, 2004
Last sequence update: June 1, 2003
Last modified: November 2, 2016
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.