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Q87QX5

- GLGA_VIBPA

UniProt

Q87QX5 - GLGA_VIBPA

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Protein

Glycogen synthase

Gene

glgA

Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Synthesizes alpha-1,4-glucan chains using ADP-glucose.UniRule annotation

Catalytic activityi

ADP-glucose + (1,4-alpha-D-glucosyl)(n) = ADP + (1,4-alpha-D-glucosyl)(n+1).UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei20 – 201ADP-glucoseUniRule annotation

GO - Molecular functioni

  1. starch synthase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Glycogen biosynthesis

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-1072-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiGT5. Glycosyltransferase Family 5.

Names & Taxonomyi

Protein namesi
Recommended name:
Glycogen synthaseUniRule annotation (EC:2.4.1.21UniRule annotation)
Alternative name(s):
Starch [bacterial glycogen] synthaseUniRule annotation
Gene namesi
Name:glgAUniRule annotation
Ordered Locus Names:VP1024
OrganismiVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Taxonomic identifieri223926 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000002493: Chromosome 1

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 485485Glycogen synthasePRO_0000188661Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi223926.VP1024.

Structurei

3D structure databases

ProteinModelPortaliQ87QX5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0297.
HOGENOMiHOG000294940.
KOiK00703.
OMAiRYPHCIN.
OrthoDBiEOG6JTC6Z.

Family and domain databases

HAMAPiMF_00484. Glycogen_synth.
InterProiIPR001296. Glyco_trans_1.
IPR011835. Glycogen/starch_synth.
IPR013534. Starch_synth_cat_dom.
[Graphical view]
PfamiPF08323. Glyco_transf_5. 1 hit.
PF00534. Glycos_transf_1. 1 hit.
[Graphical view]
TIGRFAMsiTIGR02095. glgA. 1 hit.

Sequencei

Sequence statusi: Complete.

Q87QX5-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MATNNLSILF VASEVEGLIK SGGLADVAKA LPEALQNLQQ DVRITIPAYT
60 70 80 90 100
SIERLADAEV VLETNLTSWP HTKYRVLLLT LGNNPVYLID CDPYFNRPSM
110 120 130 140 150
YAENNQAYTD NGERFAFFSA ACLDMLPKLA FQPDIIHAND WHTGLVPFLL
160 170 180 190 200
KHRYGNDPFF AHTKSVISIH NAVFKGVFSY DDVQCLPEFH CRNVPDAAVS
210 220 230 240 250
ATHITMLKAG VMNADKINAV SPTYAEELKT ELGSHGMAWE FQQRAGDLVG
260 270 280 290 300
ILNGCDYSAW NPETDIYLPM NYSADKQSMV LGKNTCKRAL QQRLNLAEKD
310 320 330 340 350
VAMFGMVCRL TQQKGVHYLL PALADFLKHD VQVVVVGTGD PVLAAQLEEV
360 370 380 390 400
AAQFSDKFVF VEAYDNELAH LVEAGSDFFL MPSEFEPCGL NQIYSMAYGT
410 420 430 440 450
LPIVRGVGGL KDSVNDYDVD PCDATGFVFY EPTSQALLLT MLRALLLYAQ
460 470 480
NLTEVQRVQL HAMQKDFCWR KAAESYLQLY RSALN
Length:485
Mass (Da):54,047
Last modified:June 1, 2003 - v1
Checksum:iA4971F2AF9CC5330
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000031 Genomic DNA. Translation: BAC59287.1.
RefSeqiNP_797403.1. NC_004603.1.

Genome annotation databases

EnsemblBacteriaiBAC59287; BAC59287; BAC59287.
GeneIDi1188528.
KEGGivpa:VP1024.
PATRICi20140266. VBIVibPar50997_0971.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000031 Genomic DNA. Translation: BAC59287.1 .
RefSeqi NP_797403.1. NC_004603.1.

3D structure databases

ProteinModelPortali Q87QX5.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 223926.VP1024.

Protein family/group databases

CAZyi GT5. Glycosyltransferase Family 5.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAC59287 ; BAC59287 ; BAC59287 .
GeneIDi 1188528.
KEGGi vpa:VP1024.
PATRICi 20140266. VBIVibPar50997_0971.

Phylogenomic databases

eggNOGi COG0297.
HOGENOMi HOG000294940.
KOi K00703.
OMAi RYPHCIN.
OrthoDBi EOG6JTC6Z.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci VPAR223926:GHK4-1072-MONOMER.

Family and domain databases

HAMAPi MF_00484. Glycogen_synth.
InterProi IPR001296. Glyco_trans_1.
IPR011835. Glycogen/starch_synth.
IPR013534. Starch_synth_cat_dom.
[Graphical view ]
Pfami PF08323. Glyco_transf_5. 1 hit.
PF00534. Glycos_transf_1. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR02095. glgA. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae."
    Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T.
    Lancet 361:743-749(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RIMD 2210633.

Entry informationi

Entry nameiGLGA_VIBPA
AccessioniPrimary (citable) accession number: Q87QX5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 25, 2003
Last sequence update: June 1, 2003
Last modified: October 1, 2014
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3