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Protein
Submitted name:

Putative glutamate decarboxylase

Gene

VP1237

Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-1286-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative glutamate decarboxylaseImported
Gene namesi
Ordered Locus Names:VP1237Imported
OrganismiVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)Imported
Taxonomic identifieri223926 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000002493 Componenti: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi223926.VP1237.

Structurei

3D structure databases

ProteinModelPortaliQ87QB3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000282553.
KOiK01580.
OMAiALGAFCS.
OrthoDBiEOG6MSRZP.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

Q87QB3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVKEQKTADV SFESLLKIFT VPEGPDSTLT KIDESLSRNL NQFLREHIVA
60 70 80 90 100
EEKPLREIEK DFSSAQIPEQ PEFVSDHTEH LLDTLVSHSV HTSAPSFIGH
110 120 130 140 150
MTSALPYFLM PLSKIMIALN QNLVKIETSK AFTPLERQVL GMLHRLIYGQ
160 170 180 190 200
NDKFYRKWMH SANHSLGAFC SGGTIANITA LWVARNKALK ADGAFNGVEK
210 220 230 240 250
EGLFKAMKHY GYEGLAVLVS ERGHYSLKKA ADVLGLGQEG LVAVKTDANN
260 270 280 290 300
RIVVDDLKTK IAELKEQNIK PIAVIGVAGT TETGSVDPLS QIAQVCQEHN
310 320 330 340 350
CHFHVDAAWG GATLMSNHYR HLLEGVELAD SVTIDAHKQL YIPMGAGMVL
360 370 380 390 400
FKDPDAMKSI EHHAQYILRK GSKDLGSHTL EGSRSGMAML VYAAMHIISR
410 420 430 440 450
PGYELLIDQS IEKARYFADL IKQQDDFELV SEPELCLLTY RYLPPLIREA
460 470 480 490 500
LDKAEGTQKE KLNELINQLT QFIQKRQRET GKSFVSRTRL NPDQWQRMNT
510 520 530 540
IVFRVVLANP LTTRDILSSV LDEQREIAKQ APSLTAKIEE MASDILGA
Length:548
Mass (Da):61,268
Last modified:June 1, 2003 - v1
Checksum:iCD0473BE69A9EE06
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000031 Genomic DNA. Translation: BAC59500.1.
RefSeqiNP_797616.1. NC_004603.1.
WP_005483514.1. NC_004603.1.

Genome annotation databases

EnsemblBacteriaiBAC59500; BAC59500; BAC59500.
GeneIDi1188742.
KEGGivpa:VP1237.
PATRICi20140678. VBIVibPar50997_1176.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000031 Genomic DNA. Translation: BAC59500.1.
RefSeqiNP_797616.1. NC_004603.1.
WP_005483514.1. NC_004603.1.

3D structure databases

ProteinModelPortaliQ87QB3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi223926.VP1237.

Protocols and materials databases

DNASUi1188742.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAC59500; BAC59500; BAC59500.
GeneIDi1188742.
KEGGivpa:VP1237.
PATRICi20140678. VBIVibPar50997_1176.

Phylogenomic databases

HOGENOMiHOG000282553.
KOiK01580.
OMAiALGAFCS.
OrthoDBiEOG6MSRZP.

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-1286-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae."
    Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T.
    Lancet 361:743-749(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RIMD 2210633Imported.

Entry informationi

Entry nameiQ87QB3_VIBPA
AccessioniPrimary (citable) accession number: Q87QB3
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: May 27, 2015
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.