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Q87QB3

- Q87QB3_VIBPA

UniProt

Q87QB3 - Q87QB3_VIBPA

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Protein
Submitted name: Putative glutamate decarboxylase
Gene
VP1237
Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein inferred from homologyi

Functioni

Cofactori

Pyridoxal phosphate By similarity.UniRule annotation

GO - Molecular functioni

  1. carboxy-lyase activity Source: InterPro
  2. pyridoxal phosphate binding Source: InterPro

GO - Biological processi

  1. carboxylic acid metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-1286-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative glutamate decarboxylaseImported
Gene namesi
Ordered Locus Names:VP1237Imported
OrganismiVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)Imported
Taxonomic identifieri223926 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000002493: Chromosome 1

Interactioni

Protein-protein interaction databases

STRINGi223926.VP1237.

Structurei

3D structure databases

ProteinModelPortaliQ87QB3.

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000282553.
KOiK01580.
OMAiGMMHNLV.
OrthoDBiEOG6MSRZP.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

Q87QB3-1 [UniParc]FASTAAdd to Basket

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MVKEQKTADV SFESLLKIFT VPEGPDSTLT KIDESLSRNL NQFLREHIVA    50
EEKPLREIEK DFSSAQIPEQ PEFVSDHTEH LLDTLVSHSV HTSAPSFIGH 100
MTSALPYFLM PLSKIMIALN QNLVKIETSK AFTPLERQVL GMLHRLIYGQ 150
NDKFYRKWMH SANHSLGAFC SGGTIANITA LWVARNKALK ADGAFNGVEK 200
EGLFKAMKHY GYEGLAVLVS ERGHYSLKKA ADVLGLGQEG LVAVKTDANN 250
RIVVDDLKTK IAELKEQNIK PIAVIGVAGT TETGSVDPLS QIAQVCQEHN 300
CHFHVDAAWG GATLMSNHYR HLLEGVELAD SVTIDAHKQL YIPMGAGMVL 350
FKDPDAMKSI EHHAQYILRK GSKDLGSHTL EGSRSGMAML VYAAMHIISR 400
PGYELLIDQS IEKARYFADL IKQQDDFELV SEPELCLLTY RYLPPLIREA 450
LDKAEGTQKE KLNELINQLT QFIQKRQRET GKSFVSRTRL NPDQWQRMNT 500
IVFRVVLANP LTTRDILSSV LDEQREIAKQ APSLTAKIEE MASDILGA 548
Length:548
Mass (Da):61,268
Last modified:June 1, 2003 - v1
Checksum:iCD0473BE69A9EE06
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000031 Genomic DNA. Translation: BAC59500.1.
RefSeqiNP_797616.1. NC_004603.1.

Genome annotation databases

EnsemblBacteriaiBAC59500; BAC59500; BAC59500.
GeneIDi1188742.
KEGGivpa:VP1237.
PATRICi20140678. VBIVibPar50997_1176.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000031 Genomic DNA. Translation: BAC59500.1 .
RefSeqi NP_797616.1. NC_004603.1.

3D structure databases

ProteinModelPortali Q87QB3.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 223926.VP1237.

Protocols and materials databases

DNASUi 1188742.
Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAC59500 ; BAC59500 ; BAC59500 .
GeneIDi 1188742.
KEGGi vpa:VP1237.
PATRICi 20140678. VBIVibPar50997_1176.

Phylogenomic databases

HOGENOMi HOG000282553.
KOi K01580.
OMAi GMMHNLV.
OrthoDBi EOG6MSRZP.

Enzyme and pathway databases

BioCyci VPAR223926:GHK4-1286-MONOMER.

Family and domain databases

Gene3Di 3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProi IPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view ]
Pfami PF00282. Pyridoxal_deC. 1 hit.
[Graphical view ]
SUPFAMi SSF53383. SSF53383. 1 hit.
TIGRFAMsi TIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae."
    Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T.
    Lancet 361:743-749(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RIMD 2210633.

Entry informationi

Entry nameiQ87QB3_VIBPA
AccessioniPrimary (citable) accession number: Q87QB3
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: May 14, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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