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Q87QB3

- Q87QB3_VIBPA

UniProt

Q87QB3 - Q87QB3_VIBPA

Protein
Submitted name:

Putative glutamate decarboxylase

Gene

VP1237

Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Status
Unreviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 65 (01 Oct 2014)
      Sequence version 1 (01 Jun 2003)
      Previous versions | rss
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    Functioni

    Cofactori

    Pyridoxal phosphate.UniRule annotation

    GO - Molecular functioni

    1. carboxy-lyase activity Source: InterPro
    2. pyridoxal phosphate binding Source: InterPro

    GO - Biological processi

    1. carboxylic acid metabolic process Source: InterPro

    Keywords - Molecular functioni

    LyaseUniRule annotation

    Keywords - Ligandi

    Pyridoxal phosphateUniRule annotation

    Enzyme and pathway databases

    BioCyciVPAR223926:GHK4-1286-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative glutamate decarboxylaseImported
    Gene namesi
    Ordered Locus Names:VP1237Imported
    OrganismiVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)Imported
    Taxonomic identifieri223926 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
    ProteomesiUP000002493: Chromosome 1

    Interactioni

    Protein-protein interaction databases

    STRINGi223926.VP1237.

    Structurei

    3D structure databases

    ProteinModelPortaliQ87QB3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the group II decarboxylase family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000282553.
    KOiK01580.
    OMAiGMMHNLV.
    OrthoDBiEOG6MSRZP.

    Family and domain databases

    Gene3Di3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProiIPR022517. Asp_decarboxylase_pyridox.
    IPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    [Graphical view]
    PfamiPF00282. Pyridoxal_deC. 1 hit.
    [Graphical view]
    SUPFAMiSSF53383. SSF53383. 1 hit.
    TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q87QB3-1 [UniParc]FASTAAdd to Basket

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    MVKEQKTADV SFESLLKIFT VPEGPDSTLT KIDESLSRNL NQFLREHIVA    50
    EEKPLREIEK DFSSAQIPEQ PEFVSDHTEH LLDTLVSHSV HTSAPSFIGH 100
    MTSALPYFLM PLSKIMIALN QNLVKIETSK AFTPLERQVL GMLHRLIYGQ 150
    NDKFYRKWMH SANHSLGAFC SGGTIANITA LWVARNKALK ADGAFNGVEK 200
    EGLFKAMKHY GYEGLAVLVS ERGHYSLKKA ADVLGLGQEG LVAVKTDANN 250
    RIVVDDLKTK IAELKEQNIK PIAVIGVAGT TETGSVDPLS QIAQVCQEHN 300
    CHFHVDAAWG GATLMSNHYR HLLEGVELAD SVTIDAHKQL YIPMGAGMVL 350
    FKDPDAMKSI EHHAQYILRK GSKDLGSHTL EGSRSGMAML VYAAMHIISR 400
    PGYELLIDQS IEKARYFADL IKQQDDFELV SEPELCLLTY RYLPPLIREA 450
    LDKAEGTQKE KLNELINQLT QFIQKRQRET GKSFVSRTRL NPDQWQRMNT 500
    IVFRVVLANP LTTRDILSSV LDEQREIAKQ APSLTAKIEE MASDILGA 548
    Length:548
    Mass (Da):61,268
    Last modified:June 1, 2003 - v1
    Checksum:iCD0473BE69A9EE06
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000031 Genomic DNA. Translation: BAC59500.1.
    RefSeqiNP_797616.1. NC_004603.1.

    Genome annotation databases

    EnsemblBacteriaiBAC59500; BAC59500; BAC59500.
    GeneIDi1188742.
    KEGGivpa:VP1237.
    PATRICi20140678. VBIVibPar50997_1176.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000031 Genomic DNA. Translation: BAC59500.1 .
    RefSeqi NP_797616.1. NC_004603.1.

    3D structure databases

    ProteinModelPortali Q87QB3.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 223926.VP1237.

    Protocols and materials databases

    DNASUi 1188742.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAC59500 ; BAC59500 ; BAC59500 .
    GeneIDi 1188742.
    KEGGi vpa:VP1237.
    PATRICi 20140678. VBIVibPar50997_1176.

    Phylogenomic databases

    HOGENOMi HOG000282553.
    KOi K01580.
    OMAi GMMHNLV.
    OrthoDBi EOG6MSRZP.

    Enzyme and pathway databases

    BioCyci VPAR223926:GHK4-1286-MONOMER.

    Family and domain databases

    Gene3Di 3.40.640.10. 1 hit.
    3.90.1150.10. 1 hit.
    InterProi IPR022517. Asp_decarboxylase_pyridox.
    IPR002129. PyrdxlP-dep_de-COase.
    IPR015424. PyrdxlP-dep_Trfase.
    IPR015421. PyrdxlP-dep_Trfase_major_sub1.
    IPR015422. PyrdxlP-dep_Trfase_major_sub2.
    [Graphical view ]
    Pfami PF00282. Pyridoxal_deC. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53383. SSF53383. 1 hit.
    TIGRFAMsi TIGR03799. NOD_PanD_pyr. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae."
      Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T.
      Lancet 361:743-749(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RIMD 2210633Imported.

    Entry informationi

    Entry nameiQ87QB3_VIBPA
    AccessioniPrimary (citable) accession number: Q87QB3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 1, 2003
    Last sequence update: June 1, 2003
    Last modified: October 1, 2014
    This is version 65 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3