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Q87QB3 (Q87QB3_VIBPA) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 64. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:VP1237 EMBL BAC59500.1
OrganismVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) [Complete proteome] [HAMAP] EMBL BAC59500.1
Taxonomic identifier223926 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length548 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Sequences

Sequence LengthMass (Da)Tools
Q87QB3 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: CD0473BE69A9EE06

FASTA54861,268
        10         20         30         40         50         60 
MVKEQKTADV SFESLLKIFT VPEGPDSTLT KIDESLSRNL NQFLREHIVA EEKPLREIEK 

        70         80         90        100        110        120 
DFSSAQIPEQ PEFVSDHTEH LLDTLVSHSV HTSAPSFIGH MTSALPYFLM PLSKIMIALN 

       130        140        150        160        170        180 
QNLVKIETSK AFTPLERQVL GMLHRLIYGQ NDKFYRKWMH SANHSLGAFC SGGTIANITA 

       190        200        210        220        230        240 
LWVARNKALK ADGAFNGVEK EGLFKAMKHY GYEGLAVLVS ERGHYSLKKA ADVLGLGQEG 

       250        260        270        280        290        300 
LVAVKTDANN RIVVDDLKTK IAELKEQNIK PIAVIGVAGT TETGSVDPLS QIAQVCQEHN 

       310        320        330        340        350        360 
CHFHVDAAWG GATLMSNHYR HLLEGVELAD SVTIDAHKQL YIPMGAGMVL FKDPDAMKSI 

       370        380        390        400        410        420 
EHHAQYILRK GSKDLGSHTL EGSRSGMAML VYAAMHIISR PGYELLIDQS IEKARYFADL 

       430        440        450        460        470        480 
IKQQDDFELV SEPELCLLTY RYLPPLIREA LDKAEGTQKE KLNELINQLT QFIQKRQRET 

       490        500        510        520        530        540 
GKSFVSRTRL NPDQWQRMNT IVFRVVLANP LTTRDILSSV LDEQREIAKQ APSLTAKIEE 


MASDILGA 

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References

[1]"Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae."
Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T.
Lancet 361:743-749(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: RIMD 2210633.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000031 Genomic DNA. Translation: BAC59500.1.
RefSeqNP_797616.1. NC_004603.1.

3D structure databases

ProteinModelPortalQ87QB3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING223926.VP1237.

Protocols and materials databases

DNASU1188742.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAC59500; BAC59500; BAC59500.
GeneID1188742.
KEGGvpa:VP1237.
PATRIC20140678. VBIVibPar50997_1176.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000282553.
KOK01580.
OMAGMMHNLV.
OrthoDBEOG6MSRZP.

Enzyme and pathway databases

BioCycVPAR223926:GHK4-1286-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ87QB3_VIBPA
AccessionPrimary (citable) accession number: Q87QB3
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: May 14, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)