Putative alpha-ribazole-5'-phosphate phosphatase CobC - Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)

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Q87Q43 (Q87Q43_VIBPA) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 54. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Putative alpha-ribazole-5'-phosphate phosphatase CobC EMBL BAC59570.1

Gene names

Ordered Locus Names:

VP1307

Organism

Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio ›

Protein attributes

Sequence length	204 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 3HJG Complete proteome
Gene Ontology (GO)
Biological_process	cobalamin biosynthetic process Inferred from electronic annotation. Source: InterPro
Molecular_function	alpha-ribazole phosphatase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q87Q43 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 06A8EA486D9C2948
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204

22,855

        10         20         30         40         50         60 
MKTLNIYLMR HGKVDAAPGL HGQTDLKVKE AEQQQIAMAW KTKGYDVAGI ISSPLSRCHD 

        70         80         90        100        110        120 
LAQILAEQQL LPMTTEDDLQ EMDFGDFDGM PFDLLTEHWK KLDAFWQSPA HHSLPNAESL 

       130        140        150        160        170        180 
STFSQRVSRA WSQIINDIND NLLIVTHGGV IRIILAHVLG VDWRNPQWYS TLAIGNASVT 

       190        200 
HITITIDDQI YASVRSIGVP LVED

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae." Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T. Lancet 361:743-749(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RIMD 2210633.
[2]	"Crystal structure of putative alpha-ribazole-5' -phosphate phosphatase FROM Vibrio parahaemolyticus." Patskovsky Y., Toro R., Morano C., Rutter M., Iizuka M., Sauder J.M., Burley S.K., Almo S.C. Submitted (MAY-2009) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.80 ANGSTROMS) OF 2-203.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

BA000031 Genomic DNA. Translation: BAC59570.1.

RefSeq

NP_797686.1. NC_004603.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3HJG	X-ray	2.80	A/B	2-203	[»]

ProteinModelPortal

ModBase

Protein-protein interaction databases

STRING

Protocols and materials databases

DNASU

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

BAC59570; BAC59570; BAC59570.

GeneID

KEGG

PATRIC

20140824. VBIVibPar50997_1249.

Organism-specific databases

CMR

Phylogenomic databases

HOGENOM

KO

OMA

ProtClustDB

Family and domain databases

InterPro

IPR013078. His_Pase_superF_clade-1.
IPR017578. Ribazole_CobC.
[Graphical view]

Pfam

PF00300. His_Phos_1. 1 hit.
[Graphical view]

SMART

SM00855. PGAM. 1 hit.
[Graphical view]

TIGRFAMs

TIGR03162. ribazole_cobC. 1 hit.

ProtoNet

Other

EvolutionaryTrace

Entry information

Entry name

Q87Q43_VIBPA

Accession

Primary (citable) accession number: Q87Q43

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	June 1, 2003
Last modified:	May 1, 2013
This is version 54 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info