Reviewed, UniProtKB/Swiss-Prot Q87Q30 (ISPD2_VIBPA)

Names and origin

Protein names

Recommended name:
    Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2
    EC=2.7.7.60
Alternative name(s):
    4-diphosphocytidyl-2C-methyl-D-erythritol synthase 2
    MEP cytidylyltransferase 2
      Short name=MCT 2

Gene names

Name:	ispD2
Ordered Locus Names:	VP1320

Organism

Vibrio parahaemolyticus [Complete proteome] [HAMAP]

Taxonomic identifier

670 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio

Protein attributes

Sequence length	238 AA.
Sequence status	Complete.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP) By similarity. HAMAP MF_00108
Catalytic activity	CTP + 2-C-methyl-D-erythritol 4-phosphate = diphosphate + 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol. HAMAP MF_00108
Pathway	Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 2/6. HAMAP MF_00108
Sequence similarities	Belongs to the ispD family.

Ontologies

Keywords
Biological process	Isoprene biosynthesis
Molecular function	Nucleotidyltransferase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	terpenoid biosynthetic process Inferred from electronic annotation. Source: HAMAP
Molecular function	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 238	238	Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2 HAMAP MF_00108		PRO_0000075645
Sites
	Site	14	1	Transition state stabilizer By similarity
	Site	22	1	Transition state stabilizer By similarity
	Site	157	1	Positions MEP for the nucleophilic attack By similarity
	Site	214	1	Positions MEP for the nucleophilic attack By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q87Q30-1 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: 3BEEB98734370510	FASTA	238	27,076
	10 20 30 40 50 60 MNVALIFAGG VGTRMQNSTK PKQFLELYNK PVIIYTLEKF EENKNIDAIV VVCVEPWIDY 70 80 90 100 110 120 LRKLLFKFDI QKVKFVIPGG ETGQESIFNG LCKIEEEFDH NSVVLIHDGV RPLINDEIIN 130 140 150 160 170 180 RNIEAVKSHG SAITTCPPVE TFVLVDNEDV VKDVHDRSLS RLAKAPQSFY LRDILKVHRQ 190 200 210 220 230 AREDCYTEAI DSCSLMTKYG YDVRLVSGIS ENIKITSPID FFIFKAIIDT QENLQVFG

References

[1]

"Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae." Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T. Lancet 361:743-749(2003) [PubMed: 12620739] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RIMD 2210633 / Serotype O3:K6.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BA000031 Genomic DNA. Translation: BAC59583.1.
RefSeq	NP_797699.1.
3D structure databases
SMR	Q87Q30. Positions 3-228.
ModBase	Search...
Genome annotation databases
GeneID	1188825.
GenomeReviews	Gene locus VP1320 in contig BA000031_GR.
KEGG	vpa:VP1320.
NMPDR	fig|223926.1.peg.1320.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG672839.
OMA	KWSSASA.
Enzyme and pathway databases
BioCyc	VPAR223926:VP1320-MONOMER.
BRENDA	2.7.7.60. 3063.
Family and domain databases
HAMAP	MF_00108. IspD. [Tree]
InterPro	IPR001228. ISPD_synthase. IPR018294. ISPD_synthase_CS. [Graphical view]
Pfam	PF01128. IspD. 1 hit. [Graphical view]
PROSITE	PS01295. ISPD. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

ISPD2_VIBPA

Accession

Primary (citable) accession number: Q87Q30

Entry history

Integrated into UniProtKB/Swiss-Prot:	August 31, 2004
Last sequence update:	June 1, 2003
Last modified:	January 19, 2010
This is version 37 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)