Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Putative agmatine deiminase

Gene

aguA

Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

Agmatine + H2O = N-carbamoylputrescine + NH3.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei353 – 3531Amidino-cysteine intermediateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-1824-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative agmatine deiminaseUniRule annotation (EC:3.5.3.12UniRule annotation)
Alternative name(s):
Agmatine iminohydrolaseUniRule annotation
Gene namesi
Name:aguAUniRule annotation
Ordered Locus Names:VP1773
OrganismiVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Taxonomic identifieri223926 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000002493 Componenti: Chromosome 1

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 360360Putative agmatine deiminasePRO_0000194347Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi223926.VP1773.

Structurei

3D structure databases

ProteinModelPortaliQ87NU5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the agmatine deiminase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105DWY. Bacteria.
COG2957. LUCA.
HOGENOMiHOG000239346.
KOiK10536.
OMAiEVLLAWT.

Family and domain databases

HAMAPiMF_01841. Agmatine_deimin. 1 hit.
InterProiIPR017754. Agmatine_deiminase.
IPR007466. Peptidyl-Arg-deiminase_porph.
[Graphical view]
PfamiPF04371. PAD_porph. 1 hit.
[Graphical view]
TIGRFAMsiTIGR03380. agmatine_aguA. 1 hit.

Sequencei

Sequence statusi: Complete.

Q87NU5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLSTTPAQD GFYFPAEFQP VSEVWLAWPE RKDNWRDDAL PAQETFARIA
60 70 80 90 100
NLIAEVTKVC VAVCSHNFDR ARQMLHSDVR LVEIPFNDAW MRDIGPTVLV
110 120 130 140 150
NQAGERRGIS WQFNAWGGEY NGLYDNWQQD DLVAGSVCDI IGIDYYRAPF
160 170 180 190 200
VLEGGAIHTD GEGTLYTTEE CLLSPGRNPQ LSKAQIEEQL KVYLGIEKII
210 220 230 240 250
WLPNGLFNDE TDGHVDNLMH VIAPGKVVLS WTDDPSDPQY ALSRQAEQVL
260 270 280 290 300
KSQHDAKGRE IEIVRLPLPG PLHYSEREAN GIDASSGMSR QAGERLSASY
310 320 330 340 350
ANFLIVNGHV FLPMLDEDTD AIAIDILQNA MPEYQIIAIP SREVLLGGGN
360
IHCITQQIPA
Length:360
Mass (Da):40,172
Last modified:June 1, 2003 - v1
Checksum:i635478931FDA1ACB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000031 Genomic DNA. Translation: BAC60036.1.
RefSeqiNP_798152.1. NC_004603.1.
WP_005464515.1. NC_004603.1.

Genome annotation databases

EnsemblBacteriaiBAC60036; BAC60036; BAC60036.
GeneIDi1189280.
KEGGivpa:VP1773.
PATRICi20141712. VBIVibPar50997_1691.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000031 Genomic DNA. Translation: BAC60036.1.
RefSeqiNP_798152.1. NC_004603.1.
WP_005464515.1. NC_004603.1.

3D structure databases

ProteinModelPortaliQ87NU5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi223926.VP1773.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAC60036; BAC60036; BAC60036.
GeneIDi1189280.
KEGGivpa:VP1773.
PATRICi20141712. VBIVibPar50997_1691.

Phylogenomic databases

eggNOGiENOG4105DWY. Bacteria.
COG2957. LUCA.
HOGENOMiHOG000239346.
KOiK10536.
OMAiEVLLAWT.

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-1824-MONOMER.

Family and domain databases

HAMAPiMF_01841. Agmatine_deimin. 1 hit.
InterProiIPR017754. Agmatine_deiminase.
IPR007466. Peptidyl-Arg-deiminase_porph.
[Graphical view]
PfamiPF04371. PAD_porph. 1 hit.
[Graphical view]
TIGRFAMsiTIGR03380. agmatine_aguA. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiAGUA_VIBPA
AccessioniPrimary (citable) accession number: Q87NU5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 16, 2005
Last sequence update: June 1, 2003
Last modified: September 7, 2016
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.