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Protein

UPF0352 protein VP2129

Gene

VP2129

Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-2185-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0352 protein VP2129UniRule annotation
Gene namesi
Ordered Locus Names:VP2129
OrganismiVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Taxonomic identifieri223926 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000002493 Componenti: Chromosome 1

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7575UPF0352 protein VP2129PRO_0000201803Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi223926.VP2129.

Structurei

Secondary structure

1
75
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi9 – 2517Combined sources
Helixi30 – 4718Combined sources
Helixi51 – 6818Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2JPQNMR-A/B1-75[»]
ProteinModelPortaliQ87MV2.
SMRiQ87MV2. Positions 1-75.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ87MV2.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0352 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105YDX. Bacteria.
COG3082. LUCA.
HOGENOMiHOG000218499.
KOiK09904.
OMAiHQAPTDL.

Family and domain databases

Gene3Di1.10.3390.10. 1 hit.
HAMAPiMF_00816. UPF0352. 1 hit.
InterProiIPR009857. UPF0352.
IPR023202. YejL_dom.
[Graphical view]
PfamiPF07208. DUF1414. 1 hit.
[Graphical view]
PIRSFiPIRSF006188. UCP006188. 1 hit.
ProDomiPD027794. UPF0352. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Q87MV2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPITSKYTDE QVEKILAEVA LVLEKHAASP ELTLMIAGNI ATNVLNQRVA
60 70
ASQRKLIAEK FAQALMSSLE TPKTH
Length:75
Mass (Da):8,204
Last modified:June 1, 2003 - v1
Checksum:iFB538418ABFD6A05
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000031 Genomic DNA. Translation: BAC60392.1.
RefSeqiNP_798508.1. NC_004603.1.
WP_005461743.1. NC_004603.1.

Genome annotation databases

EnsemblBacteriaiBAC60392; BAC60392; BAC60392.
GeneIDi1189641.
KEGGivpa:VP2129.
PATRICi20142414. VBIVibPar50997_2037.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000031 Genomic DNA. Translation: BAC60392.1.
RefSeqiNP_798508.1. NC_004603.1.
WP_005461743.1. NC_004603.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2JPQNMR-A/B1-75[»]
ProteinModelPortaliQ87MV2.
SMRiQ87MV2. Positions 1-75.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi223926.VP2129.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAC60392; BAC60392; BAC60392.
GeneIDi1189641.
KEGGivpa:VP2129.
PATRICi20142414. VBIVibPar50997_2037.

Phylogenomic databases

eggNOGiENOG4105YDX. Bacteria.
COG3082. LUCA.
HOGENOMiHOG000218499.
KOiK09904.
OMAiHQAPTDL.

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-2185-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ87MV2.

Family and domain databases

Gene3Di1.10.3390.10. 1 hit.
HAMAPiMF_00816. UPF0352. 1 hit.
InterProiIPR009857. UPF0352.
IPR023202. YejL_dom.
[Graphical view]
PfamiPF07208. DUF1414. 1 hit.
[Graphical view]
PIRSFiPIRSF006188. UCP006188. 1 hit.
ProDomiPD027794. UPF0352. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Entry informationi

Entry nameiY2129_VIBPA
AccessioniPrimary (citable) accession number: Q87MV2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 22, 2005
Last sequence update: June 1, 2003
Last modified: September 7, 2016
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.