Endoglucanase-related protein - Vibrio parahaemolyticus

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Q87LX4 (Q87LX4_VIBPA) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 51. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Submitted name:
Endoglucanase-related protein EMBL BAC60747.1

Gene names

Ordered Locus Names:

VP2484

Organism

Vibrio parahaemolyticus [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio

Protein attributes

Sequence length	579 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 3H7L Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	cellulase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q87LX4 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 0BA4E8A55BDF8F1A
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579

65,749

        10         20         30         40         50         60 
MLLLTNHIGY ERLGPKKAII QTEQPHLSSY TAQLICATSE QTVATFAVEE QGKVANWHQG 

        70         80         90        100        110        120 
YFYLIDFSSF TDSGDYFLQV EDSRSSYFTV GEHILLNQTL SDVIHYFKSQ RCGGVFDQQD 

       130        140        150        160        170        180 
RQVPVLNANQ TVDVHGGWYD ASGDVSKYLS HLSYANYLNP QQTPMVVWNI LKGLSLLEGS 

       190        200        210        220        230        240 
EDIAAFTRTR LIEEALFGAD FLVRMQNEKG FFYMTVFDKW SKDTAQREIC AYETQLGHKF 

       250        260        270        280        290        300 
DDYQAGFRQG GGVAIAALAA ASRLGVHGEY DQQKYRNAAE NGYWHLKEHN TQYLNDGEEN 

       310        320        330        340        350        360 
IIDEYCALLA SVELFKATKE TRYLEESRLW AQRLVARQMS DEQIQHFWSA NQDGSRPYFH 

       370        380        390        400        410        420 
AAEAGLPGIA LCEYLAIEDD SVQTESVKCI VNRACEFEIK ISNKVTNPFG YPRQYVKGVN 

       430        440        450        460        470        480 
ESKRDAFFVA HNNESGYWWQ GENARLGSLA TMAYLAQPHI ASQEIQQQLS VFAQDALNWI 

       490        500        510        520        530        540 
VGLNPYDMCM LDGHGRNNPD YLPQYGFFNA KGGVCNGITG GFEDEEDIAF NPPAQKDDML 

       550        560        570 
QNWRWGEQWI PHGAWYLLAI MSQAQHISQL ATSKNIKEQ

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae." Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T. Lancet 361:743-749(2003) [PubMed: 12620739] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RIMD 2210633 / Serotype O3:K6.
[2]	"CRYSTAL STRUCTURE OF ENDOGLUCANASE-RELATED PROTEIN FROM Vibrio parahaemolyticus." Patskovsky Y., Toro R., Morano C., Rutter M., Chang S., Sauder J.M., Burley S.K., Almo S.C. Submitted (APR-2009) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS) OF 2-578.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

BA000031 Genomic DNA. Translation: BAC60747.1.

RefSeq

NP_798863.1. NC_004603.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3H7L	X-ray	2.30	A/B/C	2-578	[»]

ProteinModelPortal

ModBase

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

GeneID

GenomeReviews

Gene locus VP2484 in contig BA000031_GR.

KEGG

NMPDR

fig|223926.1.peg.2484.

PATRIC

20143116. VBIVibPar50997_2385.

Organism-specific databases

CMR

Phylogenomic databases

HOGENOM

OMA

ProtClustDB

Enzyme and pathway databases

BioCyc

VPAR223926:VP2484-MONOMER.

Family and domain databases

InterPro

IPR008928. 6-hairpin_glycosidase-like.
IPR012341. 6hp_glycosidase.
IPR001701. Glyco_hydro_9.
IPR004197. Glyco_hydro_9_Ig-like.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]

Gene3D

G3DSA:1.50.10.10. CelA/Cel48F_cat. 1 hit.
G3DSA:2.60.40.10. Ig-like_fold. 1 hit.

Pfam

PF02927. CelD_N. 1 hit.
PF00759. Glyco_hydro_9. 1 hit.
[Graphical view]

SUPFAM

SSF48208. Glyco_trans_6hp. 1 hit.
SSF81296. Ig_E-set. 1 hit.

ProtoNet

Entry information

Entry name

Q87LX4_VIBPA

Accession

Primary (citable) accession number: Q87LX4

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	June 1, 2003
Last modified:	December 14, 2011
This is version 51 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·Ontologies·Sequences·References·Cross-refs·Entry info