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Q87L54 (CAPP_VIBPA) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 62. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Phosphoenolpyruvate carboxylase

Short name=PEPC
Short name=PEPCase
EC=4.1.1.31
Gene names
Name:ppc
Ordered Locus Names:VP2761
OrganismVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) [Complete proteome] [HAMAP]
Taxonomic identifier223926 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio

Protein attributes

Sequence length877 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle By similarity. HAMAP-Rule MF_00595

Catalytic activity

Phosphate + oxaloacetate = H2O + phosphoenolpyruvate + HCO3-. HAMAP-Rule MF_00595

Cofactor

Magnesium By similarity. HAMAP-Rule MF_00595

Sequence similarities

Belongs to the PEPCase type 1 family.

Sequence caution

The sequence BAC61024.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
   Biological processCarbon dioxide fixation
   LigandMagnesium
   Molecular functionLyase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbon fixation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

oxaloacetate metabolic process

Inferred from electronic annotation. Source: UniProtKB-HAMAP

tricarboxylic acid cycle

Inferred from electronic annotation. Source: InterPro

   Molecular_functionmagnesium ion binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

phosphoenolpyruvate carboxylase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 877877Phosphoenolpyruvate carboxylase HAMAP-Rule MF_00595
PRO_0000166648

Sites

Active site1381 By similarity
Active site5441 By similarity

Sequences

Sequence LengthMass (Da)Tools
Q87L54 [UniParc].

Last modified July 25, 2003. Version 2.
Checksum: 3A61D009D5493105

FASTA87799,273
        10         20         30         40         50         60 
MNEKYAALKS NVRMLGHLLG NTIRDAHGEE IFEKVETIRK LSKSAQAGNQ ADRESLIEEI 

        70         80         90        100        110        120 
KHLPDEQLTP VTRAFNQFLN LTNIAEQYHT ISRHCEEHIC EPDAINSLFS KLVQNDVSKL 

       130        140        150        160        170        180 
DTAQAVRDLN IELVLTAHPT EITRRTMINK LVKINECLSK LELSDLSSKE RKKTERRLEQ 

       190        200        210        220        230        240 
LIAQSWHSDV IRQQRPTPLD EAKWGFAVVE NSLWEAVPDF LREMNDRLKS YLGEGLPIDA 

       250        260        270        280        290        300 
RPVHFSSWMG GDRDGNPFVT HSVTREVLLL SRWKAADLYL NDINELISEL SMTVSNDQVR 

       310        320        330        340        350        360 
ELAGEDQHEP YRAILKQLRA LLNETKDILD AKIHGQKLAV KAPLQKVEQL WDPLYACYQS 

       370        380        390        400        410        420 
LHECGMGVIA DGSLLDTLRR VKAFGVHLVR LDIRQESTRH ADVLSELTRY LGIGDYEQWS 

       430        440        450        460        470        480 
EQDKIAFLTN ELASKRPLLP RDWEPSEPVK EVLDTCKIIA LQPREAFGAY VISMARTASD 

       490        500        510        520        530        540 
VLAVHLLLQE AGCPYRMDVC PLFETLDDLN NAESVIKQLM SIDLYRGFIQ NHQMVMIGYS 

       550        560        570        580        590        600 
DSAKDAGVMS AGWAQYHAME SLVKVAEDEG VELTLFHGRG GTVGRGGAPA HAALLSQPPK 

       610        620        630        640        650        660 
SLKGGLRVTE QGEMIRFKLG LPDVAVNSFN LYASAILEAN LLPPPEPKQE WRDLMEVLSE 

       670        680        690        700        710        720 
VSCEAYRGVV RGEPDFVPYF RQATPELELG KLPLGSRPAK RNPNGGVESL RAIPWIFSWS 

       730        740        750        760        770        780 
QNRLVLPAWL GAGEAIQYSV DKGHQALLEE MCREWPFFST RLGMLEMVYT KCNMEISRYY 

       790        800        810        820        830        840 
DQRLVEPQLQ PLGDRLREQL QRDIKSVLNV ENNENLMQSD PWGQESIRLR NIYVEPLNML 

       850        860        870 
QAELLYRTRQ TEEASANLEE ALMVTIAGIA AGMRNTG 

« Hide

References

[1]"Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae."
Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T.
Lancet 361:743-749(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: RIMD 2210633.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000031 Genomic DNA. Translation: BAC61024.1. Different initiation.
RefSeqNP_799140.2. NC_004603.1.

3D structure databases

ProteinModelPortalQ87L54.
SMRQ87L54. Positions 4-877.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING223926.VP2761.

Proteomic databases

PRIDEQ87L54.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAC61024; BAC61024; BAC61024.
GeneID1190311.
KEGGvpa:VP2761.
PATRIC20143730. VBIVibPar50997_2657.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2352.
HOGENOMHOG000238648.
KOK01595.
OMAAIPWVFG.
OrthoDBEOG6TJ7T8.
ProtClustDBPRK00009.

Enzyme and pathway databases

BioCycVPAR223926:GHK4-2855-MONOMER.

Family and domain databases

HAMAPMF_00595. PEPcase_type1.
InterProIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSPR00150. PEPCARBXLASE.
SUPFAMSSF51621. SSF51621. 1 hit.
PROSITEPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameCAPP_VIBPA
AccessionPrimary (citable) accession number: Q87L54
Entry history
Integrated into UniProtKB/Swiss-Prot: July 25, 2003
Last sequence update: July 25, 2003
Last modified: February 19, 2014
This is version 62 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families