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Protein

UPF0345 protein VPA0057

Gene

VPA0057

Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-3279-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0345 protein VPA0057UniRule annotation
Gene namesi
Ordered Locus Names:VPA0057
OrganismiVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Taxonomic identifieri223926 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000002493 Componenti: Chromosome 2

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002117861 – 94UPF0345 protein VPA0057Add BLAST94

Interactioni

Protein-protein interaction databases

STRINGi223926.VPA0057.

Structurei

Secondary structure

194
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 8Combined sources5
Helixi9 – 11Combined sources3
Beta strandi13 – 20Combined sources8
Beta strandi23 – 30Combined sources8
Beta strandi32 – 41Combined sources10
Beta strandi43 – 56Combined sources14
Beta strandi63 – 66Combined sources4
Beta strandi70 – 73Combined sources4
Beta strandi75 – 85Combined sources11
Beta strandi87 – 92Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2OYZX-ray1.71A2-94[»]
ProteinModelPortaliQ87K41.
SMRiQ87K41.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ87K41.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0345 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105NBK. Bacteria.
COG3123. LUCA.
HOGENOMiHOG000218057.
KOiK09913.
OMAiFQLKVAV.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
HAMAPiMF_01537. UPF0345. 1 hit.
InterProiIPR009664. DUF1255.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF06865. DUF1255. 1 hit.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 1 hit.

Sequencei

Sequence statusi: Complete.

Q87K41-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSIKENSYFA GGVKSLGFNQ HGQDVSVGVM LPGEYTFGTQ APERMTVVKG
60 70 80 90
ALVVKRVGEA DWTTYSSGES FDVEGNSSFE LQVKDATAYL CEYL
Length:94
Mass (Da):10,212
Last modified:June 1, 2003 - v1
Checksum:i5A200505EB8DA0E2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000032 Genomic DNA. Translation: BAC61400.1.
RefSeqiNP_799567.1. NC_004605.1.
WP_005464991.1. NC_004605.1.

Genome annotation databases

EnsemblBacteriaiBAC61400; BAC61400; BAC61400.
GeneIDi1190736.
KEGGivpa:VPA0057.
PATRICi20144549. VBIVibPar50997_3017.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000032 Genomic DNA. Translation: BAC61400.1.
RefSeqiNP_799567.1. NC_004605.1.
WP_005464991.1. NC_004605.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2OYZX-ray1.71A2-94[»]
ProteinModelPortaliQ87K41.
SMRiQ87K41.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi223926.VPA0057.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAC61400; BAC61400; BAC61400.
GeneIDi1190736.
KEGGivpa:VPA0057.
PATRICi20144549. VBIVibPar50997_3017.

Phylogenomic databases

eggNOGiENOG4105NBK. Bacteria.
COG3123. LUCA.
HOGENOMiHOG000218057.
KOiK09913.
OMAiFQLKVAV.

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-3279-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ87K41.

Family and domain databases

Gene3Di2.60.120.10. 1 hit.
HAMAPiMF_01537. UPF0345. 1 hit.
InterProiIPR009664. DUF1255.
IPR014710. RmlC-like_jellyroll.
IPR011051. RmlC_Cupin.
[Graphical view]
PfamiPF06865. DUF1255. 1 hit.
[Graphical view]
SUPFAMiSSF51182. SSF51182. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiY4057_VIBPA
AccessioniPrimary (citable) accession number: Q87K41
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 5, 2005
Last sequence update: June 1, 2003
Last modified: November 2, 2016
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.