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Protein
Submitted name:

Putative sugar-phosphate isomerase

Gene

VPA0080

Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

IsomeraseImported

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-3303-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative sugar-phosphate isomeraseImported
Gene namesi
Ordered Locus Names:VPA0080Imported
OrganismiVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)Imported
Taxonomic identifieri223926 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000002493 Componenti: Chromosome 2

Interactioni

Protein-protein interaction databases

STRINGi223926.VPA0080.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3ONOX-ray1.75A1-211[»]
ProteinModelPortaliQ87K18.
SMRiQ87K18. Positions 1-209.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ87K18.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini163 – 20947DUF3666InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG41061D8. Bacteria.
COG0698. LUCA.
HOGENOMiHOG000219532.
OMAiFGQINDG.
OrthoDBiEOG6JTCHX.

Family and domain databases

Gene3Di3.40.1400.10. 1 hit.
InterProiIPR022133. Ribose_5_isomerase_C.
IPR003500. RpiB_LacA_LacB.
[Graphical view]
PANTHERiPTHR30345. PTHR30345. 1 hit.
PfamiPF12408. DUF3666. 1 hit.
PF02502. LacAB_rpiB. 1 hit.
[Graphical view]
SUPFAMiSSF89623. SSF89623. 1 hit.

Sequencei

Sequence statusi: Complete.

Q87K18-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKIALMMENS QAAKNAMVAG ELNSVAGGLG HDVFNVGMTD ENDHHLTYIH
60 70 80 90 100
LGIMASILLN SKAVDFVVTG CGTGQGALMS CNLHPGVVCG YCLEPSDAFL
110 120 130 140 150
FNQINNGNAI SLAFAKGFGW AGELNVRYIF EKAFTGKRGE GYPIERAAPQ
160 170 180 190 200
QANAAILNNV KAAVAKDVVE GLRAIDQELV KTAVGSTQFQ ECFFAHCQVP
210
EIAEYVKSLL D
Length:211
Mass (Da):22,530
Last modified:June 1, 2003 - v1
Checksum:i1AA1968F6B6E3FEE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000032 Genomic DNA. Translation: BAC61423.1.
RefSeqiNP_799590.1. NC_004605.1.
WP_005482830.1. NC_004605.1.

Genome annotation databases

EnsemblBacteriaiBAC61423; BAC61423; BAC61423.
GeneIDi1190759.
KEGGivpa:VPA0080.
PATRICi20144595. VBIVibPar50997_3040.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000032 Genomic DNA. Translation: BAC61423.1.
RefSeqiNP_799590.1. NC_004605.1.
WP_005482830.1. NC_004605.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3ONOX-ray1.75A1-211[»]
ProteinModelPortaliQ87K18.
SMRiQ87K18. Positions 1-209.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi223926.VPA0080.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAC61423; BAC61423; BAC61423.
GeneIDi1190759.
KEGGivpa:VPA0080.
PATRICi20144595. VBIVibPar50997_3040.

Phylogenomic databases

eggNOGiENOG41061D8. Bacteria.
COG0698. LUCA.
HOGENOMiHOG000219532.
OMAiFGQINDG.
OrthoDBiEOG6JTCHX.

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-3303-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ87K18.

Family and domain databases

Gene3Di3.40.1400.10. 1 hit.
InterProiIPR022133. Ribose_5_isomerase_C.
IPR003500. RpiB_LacA_LacB.
[Graphical view]
PANTHERiPTHR30345. PTHR30345. 1 hit.
PfamiPF12408. DUF3666. 1 hit.
PF02502. LacAB_rpiB. 1 hit.
[Graphical view]
SUPFAMiSSF89623. SSF89623. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae."
    Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T.
    Lancet 361:743-749(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RIMD 2210633Imported.
  2. "Crystal Structure of Ribose-5-phosphate Isomerase LacAB_rpiB from Vibrio parahaemolyticus."
    Kim Y., Volkart L., Abdullah J., Joachimiak A.
    Submitted (AUG-2010) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.75 ANGSTROMS).

Entry informationi

Entry nameiQ87K18_VIBPA
AccessioniPrimary (citable) accession number: Q87K18
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: March 16, 2016
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.