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Q87HG6

- Q87HG6_VIBPA

UniProt

Q87HG6 - Q87HG6_VIBPA

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Protein
Submitted name:

Alpha-amylase

Gene
VPA0999
Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. calcium ion binding Source: InterPro
  2. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-4234-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylaseImported
Gene namesi
Ordered Locus Names:VPA0999Imported
OrganismiVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)Imported
Taxonomic identifieri223926 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000002493: Chromosome 2

Interactioni

Protein-protein interaction databases

STRINGi223926.VPA0999.

Structurei

3D structure databases

ProteinModelPortaliQ87HG6.
SMRiQ87HG6. Positions 26-504.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000094847.
KOiK01176.
OMAiRATKYGD.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

Q87HG6-1 [UniParc]FASTAAdd to Basket

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MKTFKLKRTF LPLTLLLSAP AFAGQNGTMM QYFHWYVPND GALWTQVESN    50
APALAENGFT ALWLPPAYKG AGGSNDVGYG VYDMYDLGEF DQKGSVRTKY 100
GTKAQYISAI NAAHNNNIQI YGDVVFNHRG GADGKSWVDT KRVDWDNRNI 150
ELGDKWIEAW VEFNFPGRND KYSNFHWTWY HFDGVDWDDA GKEKAIFKFK 200
GEGKAWDWEV SSEKGNYDYL MYADLDMDHP EVKQELKDWG EWYINMTGVD 250
GFRMDAVKHI KYQYLQEWID HLRWKTGKEL FTVGEYWNYD VNQLHNFITK 300
TSGSMSLFDA PLHMNFYNAS KSGGNYDMRQ IMNGTLMKDN PVKAVTLVEN 350
HDTQPLQALE STVDWWFKPL AYAFILLREE GYPSVFYADY YGAQYSDKGY 400
NINMAKVPYI EELVTLRKEY AYGKQNSYLD HWDVIGWTRE GDAEHPNSMA 450
VIMSDGPGGT KWMYTGKPST RYVDKLGIRT EEVWTDANGW AEFPVNGGSV 500
SVWVGVK 507
Length:507
Mass (Da):58,428
Last modified:June 1, 2003 - v1
Checksum:i91B549E2BE0700BD
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000032 Genomic DNA. Translation: BAC62342.1.
RefSeqiNP_800509.1. NC_004605.1.

Genome annotation databases

EnsemblBacteriaiBAC62342; BAC62342; BAC62342.
GeneIDi1191690.
KEGGivpa:VPA0999.
PATRICi20146397. VBIVibPar50997_3930.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000032 Genomic DNA. Translation: BAC62342.1 .
RefSeqi NP_800509.1. NC_004605.1.

3D structure databases

ProteinModelPortali Q87HG6.
SMRi Q87HG6. Positions 26-504.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 223926.VPA0999.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAC62342 ; BAC62342 ; BAC62342 .
GeneIDi 1191690.
KEGGi vpa:VPA0999.
PATRICi 20146397. VBIVibPar50997_3930.

Phylogenomic databases

HOGENOMi HOG000094847.
KOi K01176.
OMAi RATKYGD.
OrthoDBi EOG65QWH3.

Enzyme and pathway databases

BioCyci VPAR223926:GHK4-4234-MONOMER.

Family and domain databases

Gene3Di 2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProi IPR013776. A-amylase_thermo.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
[Graphical view ]
PIRSFi PIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTi SM00642. Aamy. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae."
    Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T.
    Lancet 361:743-749(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RIMD 2210633.

Entry informationi

Entry nameiQ87HG6_VIBPA
AccessioniPrimary (citable) accession number: Q87HG6
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: May 14, 2014
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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