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Protein
Submitted name:

Alpha-amylase

Gene

VPA0999

Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi127Calcium 1UniRule annotation1
Metal bindingi183Calcium 2UniRule annotation1
Metal bindingi205Calcium 2; via carbonyl oxygenUniRule annotation1
Metal bindingi207Calcium 2UniRule annotation1
Metal bindingi218Calcium 1UniRule annotation1
Metal bindingi224Calcium 1UniRule annotation1
Metal bindingi226Calcium 2UniRule annotation1
Active sitei255NucleophileUniRule annotation1
Metal bindingi259Calcium 1; via carbonyl oxygenUniRule annotation1
Active sitei285Proton donorUniRule annotation1
Metal bindingi324Calcium 3; via carbonyl oxygenUniRule annotation1
Metal bindingi433Calcium 3UniRule annotation1
Metal bindingi455Calcium 3UniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandCalciumUniRule annotation, Metal-bindingUniRule annotation

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-4233-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylaseImported
Gene namesi
Ordered Locus Names:VPA0999Imported
OrganismiVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)Imported
Taxonomic identifieri223926 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000002493 Componenti: Chromosome 2

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 23Sequence analysisAdd BLAST23
ChainiPRO_500430316924 – 507Sequence analysisAdd BLAST484

Interactioni

Protein-protein interaction databases

STRINGi223926.VPA0999.

Structurei

3D structure databases

ProteinModelPortaliQ87HG6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini27 – 417AamyInterPro annotationAdd BLAST391

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4105E5K. Bacteria.
COG0366. LUCA.
HOGENOMiHOG000094847.
KOiK01176.
OMAiFFHWYYP.

Family and domain databases

InterProiView protein in InterPro
IPR013776. A-amylase_thermo.
IPR006047. Glyco_hydro_13_cat_dom.
IPR017853. Glycoside_hydrolase_SF.
PfamiView protein in Pfam
PF00128. Alpha-amylase. 1 hit.
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTiView protein in SMART
SM00642. Aamy. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

Q87HG6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTFKLKRTF LPLTLLLSAP AFAGQNGTMM QYFHWYVPND GALWTQVESN
60 70 80 90 100
APALAENGFT ALWLPPAYKG AGGSNDVGYG VYDMYDLGEF DQKGSVRTKY
110 120 130 140 150
GTKAQYISAI NAAHNNNIQI YGDVVFNHRG GADGKSWVDT KRVDWDNRNI
160 170 180 190 200
ELGDKWIEAW VEFNFPGRND KYSNFHWTWY HFDGVDWDDA GKEKAIFKFK
210 220 230 240 250
GEGKAWDWEV SSEKGNYDYL MYADLDMDHP EVKQELKDWG EWYINMTGVD
260 270 280 290 300
GFRMDAVKHI KYQYLQEWID HLRWKTGKEL FTVGEYWNYD VNQLHNFITK
310 320 330 340 350
TSGSMSLFDA PLHMNFYNAS KSGGNYDMRQ IMNGTLMKDN PVKAVTLVEN
360 370 380 390 400
HDTQPLQALE STVDWWFKPL AYAFILLREE GYPSVFYADY YGAQYSDKGY
410 420 430 440 450
NINMAKVPYI EELVTLRKEY AYGKQNSYLD HWDVIGWTRE GDAEHPNSMA
460 470 480 490 500
VIMSDGPGGT KWMYTGKPST RYVDKLGIRT EEVWTDANGW AEFPVNGGSV

SVWVGVK
Length:507
Mass (Da):58,428
Last modified:June 1, 2003 - v1
Checksum:i91B549E2BE0700BD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000032 Genomic DNA. Translation: BAC62342.1.
RefSeqiNP_800509.1. NC_004605.1.
WP_005480254.1. NC_004605.1.

Genome annotation databases

EnsemblBacteriaiBAC62342; BAC62342; BAC62342.
GeneIDi1191690.
KEGGivpa:VPA0999.
PATRICi20146397. VBIVibPar50997_3930.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000032 Genomic DNA. Translation: BAC62342.1.
RefSeqiNP_800509.1. NC_004605.1.
WP_005480254.1. NC_004605.1.

3D structure databases

ProteinModelPortaliQ87HG6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi223926.VPA0999.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAC62342; BAC62342; BAC62342.
GeneIDi1191690.
KEGGivpa:VPA0999.
PATRICi20146397. VBIVibPar50997_3930.

Phylogenomic databases

eggNOGiENOG4105E5K. Bacteria.
COG0366. LUCA.
HOGENOMiHOG000094847.
KOiK01176.
OMAiFFHWYYP.

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-4233-MONOMER.

Family and domain databases

InterProiView protein in InterPro
IPR013776. A-amylase_thermo.
IPR006047. Glyco_hydro_13_cat_dom.
IPR017853. Glycoside_hydrolase_SF.
PfamiView protein in Pfam
PF00128. Alpha-amylase. 1 hit.
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTiView protein in SMART
SM00642. Aamy. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ87HG6_VIBPA
AccessioniPrimary (citable) accession number: Q87HG6
Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: May 10, 2017
This is version 82 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.