Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q87HG6

- Q87HG6_VIBPA

UniProt

Q87HG6 - Q87HG6_VIBPA

Protein
Submitted name:

Alpha-amylase

Gene

VPA0999

Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 66 (01 Oct 2014)
      Sequence version 1 (01 Jun 2003)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. calcium ion binding Source: InterPro
    2. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

    GO - Biological processi

    1. carbohydrate metabolic process Source: InterPro

    Enzyme and pathway databases

    BioCyciVPAR223926:GHK4-4234-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Alpha-amylaseImported
    Gene namesi
    Ordered Locus Names:VPA0999Imported
    OrganismiVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)Imported
    Taxonomic identifieri223926 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
    ProteomesiUP000002493: Chromosome 2

    Interactioni

    Protein-protein interaction databases

    STRINGi223926.VPA0999.

    Structurei

    3D structure databases

    ProteinModelPortaliQ87HG6.
    SMRiQ87HG6. Positions 26-504.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000094847.
    KOiK01176.
    OMAiRATKYGD.
    OrthoDBiEOG65QWH3.

    Family and domain databases

    Gene3Di2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    InterProiIPR013776. A-amylase_thermo.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
    SMARTiSM00642. Aamy. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q87HG6-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKTFKLKRTF LPLTLLLSAP AFAGQNGTMM QYFHWYVPND GALWTQVESN    50
    APALAENGFT ALWLPPAYKG AGGSNDVGYG VYDMYDLGEF DQKGSVRTKY 100
    GTKAQYISAI NAAHNNNIQI YGDVVFNHRG GADGKSWVDT KRVDWDNRNI 150
    ELGDKWIEAW VEFNFPGRND KYSNFHWTWY HFDGVDWDDA GKEKAIFKFK 200
    GEGKAWDWEV SSEKGNYDYL MYADLDMDHP EVKQELKDWG EWYINMTGVD 250
    GFRMDAVKHI KYQYLQEWID HLRWKTGKEL FTVGEYWNYD VNQLHNFITK 300
    TSGSMSLFDA PLHMNFYNAS KSGGNYDMRQ IMNGTLMKDN PVKAVTLVEN 350
    HDTQPLQALE STVDWWFKPL AYAFILLREE GYPSVFYADY YGAQYSDKGY 400
    NINMAKVPYI EELVTLRKEY AYGKQNSYLD HWDVIGWTRE GDAEHPNSMA 450
    VIMSDGPGGT KWMYTGKPST RYVDKLGIRT EEVWTDANGW AEFPVNGGSV 500
    SVWVGVK 507
    Length:507
    Mass (Da):58,428
    Last modified:June 1, 2003 - v1
    Checksum:i91B549E2BE0700BD
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000032 Genomic DNA. Translation: BAC62342.1.
    RefSeqiNP_800509.1. NC_004605.1.

    Genome annotation databases

    EnsemblBacteriaiBAC62342; BAC62342; BAC62342.
    GeneIDi1191690.
    KEGGivpa:VPA0999.
    PATRICi20146397. VBIVibPar50997_3930.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000032 Genomic DNA. Translation: BAC62342.1 .
    RefSeqi NP_800509.1. NC_004605.1.

    3D structure databases

    ProteinModelPortali Q87HG6.
    SMRi Q87HG6. Positions 26-504.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 223926.VPA0999.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAC62342 ; BAC62342 ; BAC62342 .
    GeneIDi 1191690.
    KEGGi vpa:VPA0999.
    PATRICi 20146397. VBIVibPar50997_3930.

    Phylogenomic databases

    HOGENOMi HOG000094847.
    KOi K01176.
    OMAi RATKYGD.
    OrthoDBi EOG65QWH3.

    Enzyme and pathway databases

    BioCyci VPAR223926:GHK4-4234-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    InterProi IPR013776. A-amylase_thermo.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF001021. Alph-amls_thrmst. 1 hit.
    SMARTi SM00642. Aamy. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae."
      Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T.
      Lancet 361:743-749(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RIMD 2210633Imported.

    Entry informationi

    Entry nameiQ87HG6_VIBPA
    AccessioniPrimary (citable) accession number: Q87HG6
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 1, 2003
    Last sequence update: June 1, 2003
    Last modified: October 1, 2014
    This is version 66 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3