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Protein
Submitted name:

Putative nitrite reductase NADPH (Small subunit) oxidoreductase protein

Gene

VPA1054

Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-4293-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative nitrite reductase NADPH (Small subunit) oxidoreductase proteinImported
Gene namesi
Ordered Locus Names:VPA1054Imported
OrganismiVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)Imported
Taxonomic identifieri223926 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000002493 Componenti: Chromosome 2

Interactioni

Protein-protein interaction databases

STRINGi223926.VPA1054.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3C0DX-ray2.40A/B/C/D/E/F/G/H1-111[»]
ProteinModelPortaliQ87HB1.
SMRiQ87HB1. Positions 4-111.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ87HB1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini3 – 109107NIRDInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG4105WZK. Bacteria.
COG2146. LUCA.
HOGENOMiHOG000128543.
KOiK00363.
OMAiIGKAYVM.

Family and domain databases

Gene3Di2.102.10.10. 1 hit.
InterProiIPR012748. Nitri_red_NirD.
IPR017881. Nitrite_Rdtase_lsu_NirD_bac.
IPR017941. Rieske_2Fe-2S.
[Graphical view]
PfamiPF13806. Rieske_2. 1 hit.
[Graphical view]
SUPFAMiSSF50022. SSF50022. 1 hit.
TIGRFAMsiTIGR02378. nirD_assim_sml. 1 hit.
PROSITEiPS51300. NIRD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q87HB1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAALTKVKLC QLDDLMPFIG ATVLIEGERV ALFYIPDSGV YAVQDWDPIG
60 70 80 90 100
KAYVMSRGIV GDINGEMCVA SPLYKQHFSL KSGQCLEDEA HCLKTWRVTV
110
DDNQVCYLAK E
Length:111
Mass (Da):12,346
Last modified:June 1, 2003 - v1
Checksum:i346B87CC52312F3C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000032 Genomic DNA. Translation: BAC62397.1.
RefSeqiNP_800564.1. NC_004605.1.
WP_005463771.1. NC_004605.1.

Genome annotation databases

EnsemblBacteriaiBAC62397; BAC62397; BAC62397.
GeneIDi1191749.
KEGGivpa:VPA1054.
PATRICi20146511. VBIVibPar50997_3983.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000032 Genomic DNA. Translation: BAC62397.1.
RefSeqiNP_800564.1. NC_004605.1.
WP_005463771.1. NC_004605.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3C0DX-ray2.40A/B/C/D/E/F/G/H1-111[»]
ProteinModelPortaliQ87HB1.
SMRiQ87HB1. Positions 4-111.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi223926.VPA1054.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAC62397; BAC62397; BAC62397.
GeneIDi1191749.
KEGGivpa:VPA1054.
PATRICi20146511. VBIVibPar50997_3983.

Phylogenomic databases

eggNOGiENOG4105WZK. Bacteria.
COG2146. LUCA.
HOGENOMiHOG000128543.
KOiK00363.
OMAiIGKAYVM.

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-4293-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ87HB1.

Family and domain databases

Gene3Di2.102.10.10. 1 hit.
InterProiIPR012748. Nitri_red_NirD.
IPR017881. Nitrite_Rdtase_lsu_NirD_bac.
IPR017941. Rieske_2Fe-2S.
[Graphical view]
PfamiPF13806. Rieske_2. 1 hit.
[Graphical view]
SUPFAMiSSF50022. SSF50022. 1 hit.
TIGRFAMsiTIGR02378. nirD_assim_sml. 1 hit.
PROSITEiPS51300. NIRD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ87HB1_VIBPA
AccessioniPrimary (citable) accession number: Q87HB1
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: September 7, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.