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Protein
Submitted name:

Putative nitrite reductase NADPH (Small subunit) oxidoreductase protein

Gene

VPA1054

Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-4293-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative nitrite reductase NADPH (Small subunit) oxidoreductase proteinImported
Gene namesi
Ordered Locus Names:VPA1054Imported
OrganismiVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)Imported
Taxonomic identifieri223926 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000002493 Componenti: Chromosome 2

Interactioni

Protein-protein interaction databases

STRINGi223926.VPA1054.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3C0DX-ray2.40A/B/C/D/E/F/G/H1-111[»]
ProteinModelPortaliQ87HB1.
SMRiQ87HB1. Positions 4-111.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ87HB1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini3 – 109107NIRDInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiENOG4105WZK. Bacteria.
COG2146. LUCA.
HOGENOMiHOG000128543.
KOiK00363.
OMAiIGKAYVM.
OrthoDBiEOG6PP9RC.

Family and domain databases

Gene3Di2.102.10.10. 1 hit.
InterProiIPR012748. Nitri_red_NirD.
IPR017881. Nitrite_Rdtase_lsu_NirD_bac.
IPR017941. Rieske_2Fe-2S.
[Graphical view]
PfamiPF13806. Rieske_2. 1 hit.
[Graphical view]
SUPFAMiSSF50022. SSF50022. 1 hit.
TIGRFAMsiTIGR02378. nirD_assim_sml. 1 hit.
PROSITEiPS51300. NIRD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q87HB1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAALTKVKLC QLDDLMPFIG ATVLIEGERV ALFYIPDSGV YAVQDWDPIG
60 70 80 90 100
KAYVMSRGIV GDINGEMCVA SPLYKQHFSL KSGQCLEDEA HCLKTWRVTV
110
DDNQVCYLAK E
Length:111
Mass (Da):12,346
Last modified:June 1, 2003 - v1
Checksum:i346B87CC52312F3C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000032 Genomic DNA. Translation: BAC62397.1.
RefSeqiNP_800564.1. NC_004605.1.
WP_005463771.1. NC_004605.1.

Genome annotation databases

EnsemblBacteriaiBAC62397; BAC62397; BAC62397.
GeneIDi1191749.
KEGGivpa:VPA1054.
PATRICi20146511. VBIVibPar50997_3983.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000032 Genomic DNA. Translation: BAC62397.1.
RefSeqiNP_800564.1. NC_004605.1.
WP_005463771.1. NC_004605.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3C0DX-ray2.40A/B/C/D/E/F/G/H1-111[»]
ProteinModelPortaliQ87HB1.
SMRiQ87HB1. Positions 4-111.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi223926.VPA1054.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAC62397; BAC62397; BAC62397.
GeneIDi1191749.
KEGGivpa:VPA1054.
PATRICi20146511. VBIVibPar50997_3983.

Phylogenomic databases

eggNOGiENOG4105WZK. Bacteria.
COG2146. LUCA.
HOGENOMiHOG000128543.
KOiK00363.
OMAiIGKAYVM.
OrthoDBiEOG6PP9RC.

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-4293-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ87HB1.

Family and domain databases

Gene3Di2.102.10.10. 1 hit.
InterProiIPR012748. Nitri_red_NirD.
IPR017881. Nitrite_Rdtase_lsu_NirD_bac.
IPR017941. Rieske_2Fe-2S.
[Graphical view]
PfamiPF13806. Rieske_2. 1 hit.
[Graphical view]
SUPFAMiSSF50022. SSF50022. 1 hit.
TIGRFAMsiTIGR02378. nirD_assim_sml. 1 hit.
PROSITEiPS51300. NIRD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae."
    Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T.
    Lancet 361:743-749(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RIMD 2210633Imported.
  2. "Crystal structure of the putative nitrite reductase NADPH (small subunit) oxidoreductase protein Q87HB1."
    Kuzin A.P., Abashidze M., Seetharaman J., Vorobiev S.M., Wang D., Fang Y., Owens L., Ma L-C., Xiao R., Liu J., Baran M.C., Acton T.B., Rost B., Montelione G.T., Tong L., Hunt J.F.
    Submitted (JAN-2008) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS).

Entry informationi

Entry nameiQ87HB1_VIBPA
AccessioniPrimary (citable) accession number: Q87HB1
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: March 16, 2016
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.