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Protein

GlcNAc-binding protein A

Gene

gbpA

Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin.UniRule annotation

GO - Molecular functioni

Keywordsi

LigandChitin-binding

Protein family/group databases

CAZyiAA10. Auxiliary Activities 10.
CBM73. Carbohydrate-Binding Module Family 73.

Names & Taxonomyi

Protein namesi
Recommended name:
GlcNAc-binding protein AUniRule annotation
Gene namesi
Name:gbpAUniRule annotation
Ordered Locus Names:VPA1598
OrganismiVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Taxonomic identifieri223926 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
Proteomesi
  • UP000002493 Componenti: Chromosome 2

Subcellular locationi

Q87FT0:
  • Secreted UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 23UniRule annotationAdd BLAST23
ChainiPRO_000022972524 – 487GlcNAc-binding protein AAdd BLAST464

Interactioni

Protein-protein interaction databases

STRINGi223926.VPA1598.

Structurei

3D structure databases

SMRiQ87FT0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini24 – 201Chitin-binding type-4UniRule annotationAdd BLAST178
Domaini438 – 479Chitin-binding type-3UniRule annotationAdd BLAST42

Sequence similaritiesi

Belongs to the GbpA family.UniRule annotation

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4108M1A. Bacteria.
COG3397. LUCA.
HOGENOMiHOG000271617.
KOiK21712.
OMAiWTFTANH.

Family and domain databases

HAMAPiMF_01905. GbpA. 1 hit.
InterProiView protein in InterPro
IPR004302. Cellulose/chitin-bd_N.
IPR020879. GlcNAc-bd_A.
IPR014756. Ig_E-set.
PfamiView protein in Pfam
PF03067. LPMO_10. 1 hit.
SUPFAMiSSF81296. SSF81296. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q87FT0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKSFPNKSLV ALAIASMSSG VLAHGYVSES NDGVAASRAA LCKYPTSDTN
60 70 80 90 100
ERNTNCGAIQ YEPQSVEGPD GFPETGPRDG KIASAETALA AALDEQTADR
110 120 130 140 150
WVKRPIKSGT QTFEWTFTAN HVTRDWKYYI TKPNWNPNAS LSRDSFDLNP
160 170 180 190 200
FCVVDGNMVQ PPKQMSHQCN VPEREGYHVI LAVWDVGDTA ASFYNVIDVK
210 220 230 240 250
FDGDDPVIPE WTQGGQIIPT MNLKVGDSVY TRVFDQSGEN VAYRTELAIS
260 270 280 290 300
NDVLTQAKNW SYALASKINQ EQTKLQAGQY SEDKFTPVYG TNPIYLQSNS
310 320 330 340 350
GLERVEIGYN IETPVPDYSL TVDGLASEYI IGTEPTALDL TLTAEGDLTA
360 370 380 390 400
ELTVYNHHRE PLASWTGSIQ DGASEQVELT LSKSEPGHHM LVTRIKDTDG
410 420 430 440 450
NLVDQQTLDF HLKSEEVTPP PSGEYDFVFP EGLSSYTAGT KVLASDGAIY
460 470 480
QCKPFPYSGY CVQWSESATQ FEPATGSHWE MAWDKLN
Length:487
Mass (Da):53,630
Last modified:June 1, 2003 - v1
Checksum:i243FB0B931BA3E0E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000032 Genomic DNA. Translation: BAC62941.1.
RefSeqiNP_801108.1. NC_004605.1.
WP_005480168.1. NC_004605.1.

Genome annotation databases

EnsemblBacteriaiBAC62941; BAC62941; BAC62941.
GeneIDi1192294.
KEGGivpa:VPA1598.
PATRICifig|223926.6.peg.4518.

Similar proteinsi

Entry informationi

Entry nameiGBPA_VIBPA
AccessioniPrimary (citable) accession number: Q87FT0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 4, 2006
Last sequence update: June 1, 2003
Last modified: September 27, 2017
This is version 70 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families