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Q87FR2 (Q87FR2_VIBPA) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 64. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length686 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
Q87FR2 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 18E43F8C8AE6EC65

FASTA68676,973
        10         20         30         40         50         60 
MKLNLITTTL LLASASAIAE PNITISTTTN SRDFPLSAEQ PLVVPLTKDG YTLKITGVEG 

        70         80         90        100        110        120 
DCVAPDGQKV KFNKPIALNC GKPTELPLKV RFTGDYSFAY DDAAKTLLFK REPKKAAKTE 

       130        140        150        160        170        180 
FKRPIPQVQC EVYQGGEVTI AVGDSFPEGT KLRDAYSGQM VEVKEQKVSL TPSKDSGGLV 

       190        200        210        220        230        240 
LLEPVQKTKE AVLFDYRNAN IYFVMVDRFN NADASNDNSY GRKKDGKDEV GTFHGGDLKG 

       250        260        270        280        290        300 
VIEKLDYIKS LGTDAIWLSP IVEQVHGFVG GGDSGSFPFY AYHGYWTRDF TKIDENFGNE 

       310        320        330        340        350        360 
EDLKTLVEEA HKRGLKVLMD AVINHSGYST LADLQFDGID VLKPNAELPK KWGDWQPKAG 

       370        380        390        400        410        420 
ENWHSYHQNI DYQSLNWAKW WGGDWVRTGL PGYPAPGSSD ITMSLAGLPD FITELDKAVK 

       430        440        450        460        470        480 
PAQWLLDNPG TRVEARDNYT VSDYLIEWQT DWVKRFGIDG YRVDTVKHVE GEVWKRLKEE 

       490        500        510        520        530        540 
ASNSLEQWRK ENGKSGQPFW MMGEVWGHTA YRSPYFDDGF DALINFDMQK KLDKGAACFS 

       550        560        570        580        590        600 
QMADTYQSYA DTIANEKDFN PVSYMSSHDT ELFFSRFKDY GMQRNAANAL LLSPGAVQVY 

       610        620        630        640        650        660 
YGDEVGRNIG PYADDFHQGT RSDMVWKLSD DKQALLKHWQ TLGQFRQAHP AIGAGQHRVI 

       670        680 
EQEGAYVFSR SLGNDKVVVA FVGRDK 

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References

[1]"Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae."
Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T.
Lancet 361:743-749(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: RIMD 2210633.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000032 Genomic DNA. Translation: BAC62959.1.
RefSeqNP_801126.1. NC_004605.1.

3D structure databases

ProteinModelPortalQ87FR2.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING223926.VPA1616.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAC62959; BAC62959; BAC62959.
GeneID1192312.
KEGGvpa:VPA1616.
PATRIC20147617. VBIVibPar50997_4536.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000273912.
KOK01176.
OMAALINFDM.
OrthoDBEOG65QWH3.

Enzyme and pathway databases

BioCycVPAR223926:GHK4-4856-MONOMER.

Family and domain databases

Gene3D3.20.20.80. 1 hit.
InterProIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ87FR2_VIBPA
AccessionPrimary (citable) accession number: Q87FR2
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: May 14, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)