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Q87FR2

- Q87FR2_VIBPA

UniProt

Q87FR2 - Q87FR2_VIBPA

Protein
Submitted name:

Alpha-amylase

Gene

VPA1616

Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 65 (01 Oct 2014)
      Sequence version 1 (01 Jun 2003)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. alpha-amylase activity Source: InterPro
    2. calcium ion binding Source: InterPro

    GO - Biological processi

    1. alpha-glucan catabolic process Source: InterPro
    2. cellular oligosaccharide catabolic process Source: InterPro

    Enzyme and pathway databases

    BioCyciVPAR223926:GHK4-4856-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Alpha-amylaseImported
    Gene namesi
    Ordered Locus Names:VPA1616Imported
    OrganismiVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)Imported
    Taxonomic identifieri223926 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
    ProteomesiUP000002493: Chromosome 2

    Subcellular locationi

    GO - Cellular componenti

    1. periplasmic space Source: InterPro

    Interactioni

    Protein-protein interaction databases

    STRINGi223926.VPA1616.

    Structurei

    3D structure databases

    ProteinModelPortaliQ87FR2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000273912.
    KOiK01176.
    OMAiALINFDM.
    OrthoDBiEOG65QWH3.

    Family and domain databases

    Gene3Di3.20.20.80. 1 hit.
    InterProiIPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    [Graphical view]
    PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTiSM00642. Aamy. 1 hit.
    [Graphical view]
    SUPFAMiSSF51445. SSF51445. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q87FR2-1 [UniParc]FASTAAdd to Basket

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    MKLNLITTTL LLASASAIAE PNITISTTTN SRDFPLSAEQ PLVVPLTKDG    50
    YTLKITGVEG DCVAPDGQKV KFNKPIALNC GKPTELPLKV RFTGDYSFAY 100
    DDAAKTLLFK REPKKAAKTE FKRPIPQVQC EVYQGGEVTI AVGDSFPEGT 150
    KLRDAYSGQM VEVKEQKVSL TPSKDSGGLV LLEPVQKTKE AVLFDYRNAN 200
    IYFVMVDRFN NADASNDNSY GRKKDGKDEV GTFHGGDLKG VIEKLDYIKS 250
    LGTDAIWLSP IVEQVHGFVG GGDSGSFPFY AYHGYWTRDF TKIDENFGNE 300
    EDLKTLVEEA HKRGLKVLMD AVINHSGYST LADLQFDGID VLKPNAELPK 350
    KWGDWQPKAG ENWHSYHQNI DYQSLNWAKW WGGDWVRTGL PGYPAPGSSD 400
    ITMSLAGLPD FITELDKAVK PAQWLLDNPG TRVEARDNYT VSDYLIEWQT 450
    DWVKRFGIDG YRVDTVKHVE GEVWKRLKEE ASNSLEQWRK ENGKSGQPFW 500
    MMGEVWGHTA YRSPYFDDGF DALINFDMQK KLDKGAACFS QMADTYQSYA 550
    DTIANEKDFN PVSYMSSHDT ELFFSRFKDY GMQRNAANAL LLSPGAVQVY 600
    YGDEVGRNIG PYADDFHQGT RSDMVWKLSD DKQALLKHWQ TLGQFRQAHP 650
    AIGAGQHRVI EQEGAYVFSR SLGNDKVVVA FVGRDK 686
    Length:686
    Mass (Da):76,973
    Last modified:June 1, 2003 - v1
    Checksum:i18E43F8C8AE6EC65
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000032 Genomic DNA. Translation: BAC62959.1.
    RefSeqiNP_801126.1. NC_004605.1.

    Genome annotation databases

    EnsemblBacteriaiBAC62959; BAC62959; BAC62959.
    GeneIDi1192312.
    KEGGivpa:VPA1616.
    PATRICi20147617. VBIVibPar50997_4536.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000032 Genomic DNA. Translation: BAC62959.1 .
    RefSeqi NP_801126.1. NC_004605.1.

    3D structure databases

    ProteinModelPortali Q87FR2.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 223926.VPA1616.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAC62959 ; BAC62959 ; BAC62959 .
    GeneIDi 1192312.
    KEGGi vpa:VPA1616.
    PATRICi 20147617. VBIVibPar50997_4536.

    Phylogenomic databases

    HOGENOMi HOG000273912.
    KOi K01176.
    OMAi ALINFDM.
    OrthoDBi EOG65QWH3.

    Enzyme and pathway databases

    BioCyci VPAR223926:GHK4-4856-MONOMER.

    Family and domain databases

    Gene3Di 3.20.20.80. 1 hit.
    InterProi IPR014635. A_amylase_MalS.
    IPR015902. Glyco_hydro_13.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR006589. Glyco_hydro_13_sub_cat_dom.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF036917. Alph_amls_MalS. 1 hit.
    SMARTi SM00642. Aamy. 1 hit.
    [Graphical view ]
    SUPFAMi SSF51445. SSF51445. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae."
      Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T.
      Lancet 361:743-749(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: RIMD 2210633Imported.

    Entry informationi

    Entry nameiQ87FR2_VIBPA
    AccessioniPrimary (citable) accession number: Q87FR2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 1, 2003
    Last sequence update: June 1, 2003
    Last modified: October 1, 2014
    This is version 65 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3