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Q87FR2

- Q87FR2_VIBPA

UniProt

Q87FR2 - Q87FR2_VIBPA

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Protein
Submitted name: Alpha-amylase
Gene
VPA1616
Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. alpha-amylase activity Source: InterPro
  2. calcium ion binding Source: InterPro

GO - Biological processi

  1. alpha-glucan catabolic process Source: InterPro
  2. cellular oligosaccharide catabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-4856-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylaseImported
Gene namesi
Ordered Locus Names:VPA1616Imported
OrganismiVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)Imported
Taxonomic identifieri223926 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000002493: Chromosome 2

Subcellular locationi

GO - Cellular componenti

  1. periplasmic space Source: InterPro
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi223926.VPA1616.

Structurei

3D structure databases

ProteinModelPortaliQ87FR2.

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000273912.
KOiK01176.
OMAiALINFDM.
OrthoDBiEOG65QWH3.

Family and domain databases

Gene3Di3.20.20.80. 1 hit.
InterProiIPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PIRSFiPIRSF036917. Alph_amls_MalS. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

Q87FR2-1 [UniParc]FASTAAdd to Basket

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MKLNLITTTL LLASASAIAE PNITISTTTN SRDFPLSAEQ PLVVPLTKDG    50
YTLKITGVEG DCVAPDGQKV KFNKPIALNC GKPTELPLKV RFTGDYSFAY 100
DDAAKTLLFK REPKKAAKTE FKRPIPQVQC EVYQGGEVTI AVGDSFPEGT 150
KLRDAYSGQM VEVKEQKVSL TPSKDSGGLV LLEPVQKTKE AVLFDYRNAN 200
IYFVMVDRFN NADASNDNSY GRKKDGKDEV GTFHGGDLKG VIEKLDYIKS 250
LGTDAIWLSP IVEQVHGFVG GGDSGSFPFY AYHGYWTRDF TKIDENFGNE 300
EDLKTLVEEA HKRGLKVLMD AVINHSGYST LADLQFDGID VLKPNAELPK 350
KWGDWQPKAG ENWHSYHQNI DYQSLNWAKW WGGDWVRTGL PGYPAPGSSD 400
ITMSLAGLPD FITELDKAVK PAQWLLDNPG TRVEARDNYT VSDYLIEWQT 450
DWVKRFGIDG YRVDTVKHVE GEVWKRLKEE ASNSLEQWRK ENGKSGQPFW 500
MMGEVWGHTA YRSPYFDDGF DALINFDMQK KLDKGAACFS QMADTYQSYA 550
DTIANEKDFN PVSYMSSHDT ELFFSRFKDY GMQRNAANAL LLSPGAVQVY 600
YGDEVGRNIG PYADDFHQGT RSDMVWKLSD DKQALLKHWQ TLGQFRQAHP 650
AIGAGQHRVI EQEGAYVFSR SLGNDKVVVA FVGRDK 686
Length:686
Mass (Da):76,973
Last modified:June 1, 2003 - v1
Checksum:i18E43F8C8AE6EC65
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000032 Genomic DNA. Translation: BAC62959.1.
RefSeqiNP_801126.1. NC_004605.1.

Genome annotation databases

EnsemblBacteriaiBAC62959; BAC62959; BAC62959.
GeneIDi1192312.
KEGGivpa:VPA1616.
PATRICi20147617. VBIVibPar50997_4536.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000032 Genomic DNA. Translation: BAC62959.1 .
RefSeqi NP_801126.1. NC_004605.1.

3D structure databases

ProteinModelPortali Q87FR2.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 223926.VPA1616.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAC62959 ; BAC62959 ; BAC62959 .
GeneIDi 1192312.
KEGGi vpa:VPA1616.
PATRICi 20147617. VBIVibPar50997_4536.

Phylogenomic databases

HOGENOMi HOG000273912.
KOi K01176.
OMAi ALINFDM.
OrthoDBi EOG65QWH3.

Enzyme and pathway databases

BioCyci VPAR223926:GHK4-4856-MONOMER.

Family and domain databases

Gene3Di 3.20.20.80. 1 hit.
InterProi IPR014635. A_amylase_MalS.
IPR015902. Glyco_hydro_13.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
[Graphical view ]
PIRSFi PIRSF036917. Alph_amls_MalS. 1 hit.
SMARTi SM00642. Aamy. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae."
    Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T.
    Lancet 361:743-749(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RIMD 2210633.

Entry informationi

Entry nameiQ87FR2_VIBPA
AccessioniPrimary (citable) accession number: Q87FR2
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: May 14, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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