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Q87FR0

- GLGB_VIBPA

UniProt

Q87FR0 - GLGB_VIBPA

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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei435 – 4351NucleophileUniRule annotation
Active sitei488 – 4881Proton donorUniRule annotation

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-4858-MONOMER.
UniPathwayiUPA00164.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
Alpha-(1->4)-glucan branching enzymeUniRule annotation
Glycogen branching enzymeUniRule annotation
Short name:
BEUniRule annotation
Gene namesi
Name:glgBUniRule annotation
Ordered Locus Names:VPA1618
OrganismiVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Taxonomic identifieri223926 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000002493: Chromosome 2

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7557551,4-alpha-glucan branching enzyme GlgBPRO_0000188761Add
BLAST

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi223926.VPA1618.

Structurei

3D structure databases

ProteinModelPortaliQ87FR0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiAKLLFMG.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q87FR0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSSQRWLWRN QHSVQTNIGS REKDLKITKT KKIKKKHERA YELLAEAAYS
60 70 80 90 100
DPFAALGPFI DDGEGSLRVW MPGANKVELL VNGEPRVALE RDGDSGFILK
110 120 130 140 150
EQRDLHLTHY RLAVDWNGVE QIIDDPYQYH NIYQEYEHLH TPKDMYHYMG
160 170 180 190 200
AHFVTLERGG ENISGVRFLV YAPHASAVSL VGCFNQWDGR RHPMQRLDYG
210 220 230 240 250
IWGLFIPGLE EGVQYKFELK GPNGEGLPHK QDPWGFYSEQ YPSFASITYD
260 270 280 290 300
HKRYQWQDAK WQNRAVTQKR DEALSFYELH AGSWKRDGKG DFLNYRELAE
310 320 330 340 350
QLVPYLVDMG YTHVELMPVS EHPFYGSWGY QPVGLFAPTS RYGSPDDFKF
360 370 380 390 400
FVDACHQAGI GVVLDWVPAH FPSDDHGLAN FDGTPLFHDP DPRRGWHQDW
410 420 430 440 450
NSYIYDLGRE HVRRFLVSNA LYWFEQFHID GIRVDAVASM LYLDYSRSHD
460 470 480 490 500
QWVPNVDGGN ENYDAIATLK WMNEEVYKHF PNAMTIAEES TAFPGVSAPT
510 520 530 540 550
FMGGLGFGFK WNMGWMHDSL SYVKEDPVHR KYHHNTITFP LVYAHSENYV
560 570 580 590 600
LSLSHDEVVY GKGSIHNKMP GDEWQQTANL RAYYGYMYGQ PGKKLNFMGA
610 620 630 640 650
EIGQTAEWNH DDQLQWFLLE YERHQGVQKL MRDLNHLYRN EAAMHDQDCV
660 670 680 690 700
PAGFEWRLQD EADASILAHE RISKEGERIL IITNFTPVPH ERFRLGVPNV
710 720 730 740 750
GQYELLLNTD DSKYGGSDFK VLTSVKTEKV ESESLPQSLE LRLPPLSTVF

YKLHK
Length:755
Mass (Da):87,504
Last modified:June 1, 2003 - v1
Checksum:i8F052368B6B57D79
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000032 Genomic DNA. Translation: BAC62961.1.
RefSeqiNP_801128.1. NC_004605.1.

Genome annotation databases

EnsemblBacteriaiBAC62961; BAC62961; BAC62961.
GeneIDi1192314.
KEGGivpa:VPA1618.
PATRICi20147621. VBIVibPar50997_4538.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000032 Genomic DNA. Translation: BAC62961.1 .
RefSeqi NP_801128.1. NC_004605.1.

3D structure databases

ProteinModelPortali Q87FR0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 223926.VPA1618.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAC62961 ; BAC62961 ; BAC62961 .
GeneIDi 1192314.
KEGGi vpa:VPA1618.
PATRICi 20147621. VBIVibPar50997_4538.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi AKLLFMG.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci VPAR223926:GHK4-4858-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae."
    Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T.
    Lancet 361:743-749(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RIMD 2210633.

Entry informationi

Entry nameiGLGB_VIBPA
AccessioniPrimary (citable) accession number: Q87FR0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 15, 2003
Last sequence update: June 1, 2003
Last modified: November 26, 2014
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3