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Q87FR0

- GLGB_VIBPA

UniProt

Q87FR0 - GLGB_VIBPA

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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene
glgB, VPA1618
Organism
Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei435 – 4351Nucleophile By similarity
Active sitei488 – 4881Proton donor By similarity

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciVPAR223926:GHK4-4858-MONOMER.
UniPathwayiUPA00164.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgB (EC:2.4.1.18)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase
Alpha-(1->4)-glucan branching enzyme
Glycogen branching enzyme
Short name:
BE
Gene namesi
Name:glgB
Ordered Locus Names:VPA1618
OrganismiVibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Taxonomic identifieri223926 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeVibrio
ProteomesiUP000002493: Chromosome 2

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7557551,4-alpha-glucan branching enzyme GlgBUniRule annotationPRO_0000188761Add
BLAST

Interactioni

Subunit structurei

Monomer By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi223926.VPA1618.

Structurei

3D structure databases

ProteinModelPortaliQ87FR0.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiAKLLFMG.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q87FR0-1 [UniParc]FASTAAdd to Basket

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MSSQRWLWRN QHSVQTNIGS REKDLKITKT KKIKKKHERA YELLAEAAYS    50
DPFAALGPFI DDGEGSLRVW MPGANKVELL VNGEPRVALE RDGDSGFILK 100
EQRDLHLTHY RLAVDWNGVE QIIDDPYQYH NIYQEYEHLH TPKDMYHYMG 150
AHFVTLERGG ENISGVRFLV YAPHASAVSL VGCFNQWDGR RHPMQRLDYG 200
IWGLFIPGLE EGVQYKFELK GPNGEGLPHK QDPWGFYSEQ YPSFASITYD 250
HKRYQWQDAK WQNRAVTQKR DEALSFYELH AGSWKRDGKG DFLNYRELAE 300
QLVPYLVDMG YTHVELMPVS EHPFYGSWGY QPVGLFAPTS RYGSPDDFKF 350
FVDACHQAGI GVVLDWVPAH FPSDDHGLAN FDGTPLFHDP DPRRGWHQDW 400
NSYIYDLGRE HVRRFLVSNA LYWFEQFHID GIRVDAVASM LYLDYSRSHD 450
QWVPNVDGGN ENYDAIATLK WMNEEVYKHF PNAMTIAEES TAFPGVSAPT 500
FMGGLGFGFK WNMGWMHDSL SYVKEDPVHR KYHHNTITFP LVYAHSENYV 550
LSLSHDEVVY GKGSIHNKMP GDEWQQTANL RAYYGYMYGQ PGKKLNFMGA 600
EIGQTAEWNH DDQLQWFLLE YERHQGVQKL MRDLNHLYRN EAAMHDQDCV 650
PAGFEWRLQD EADASILAHE RISKEGERIL IITNFTPVPH ERFRLGVPNV 700
GQYELLLNTD DSKYGGSDFK VLTSVKTEKV ESESLPQSLE LRLPPLSTVF 750
YKLHK 755
Length:755
Mass (Da):87,504
Last modified:June 1, 2003 - v1
Checksum:i8F052368B6B57D79
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000032 Genomic DNA. Translation: BAC62961.1.
RefSeqiNP_801128.1. NC_004605.1.
WP_011106543.1. NC_004605.1.

Genome annotation databases

EnsemblBacteriaiBAC62961; BAC62961; BAC62961.
GeneIDi1192314.
KEGGivpa:VPA1618.
PATRICi20147621. VBIVibPar50997_4538.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000032 Genomic DNA. Translation: BAC62961.1 .
RefSeqi NP_801128.1. NC_004605.1.
WP_011106543.1. NC_004605.1.

3D structure databases

ProteinModelPortali Q87FR0.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 223926.VPA1618.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAC62961 ; BAC62961 ; BAC62961 .
GeneIDi 1192314.
KEGGi vpa:VPA1618.
PATRICi 20147621. VBIVibPar50997_4538.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi AKLLFMG.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci VPAR223926:GHK4-4858-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae."
    Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T.
    Lancet 361:743-749(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: RIMD 2210633.

Entry informationi

Entry nameiGLGB_VIBPA
AccessioniPrimary (citable) accession number: Q87FR0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 15, 2003
Last sequence update: June 1, 2003
Last modified: September 3, 2014
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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