Q87FK5 (ARAB_VIBPA) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Ribulokinase
EC=2.7.1.16

Gene names

Name:	araB
Ordered Locus Names:	VPA1674

Organism

Vibrio parahaemolyticus [Complete proteome] [HAMAP]

Taxonomic identifier

670 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Vibrio

Protein attributes

Sequence length	567 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate. HAMAP MF_00520
Pathway	Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 2/3. HAMAP MF_00520
Sequence similarities	Belongs to the ribulokinase family.

Ontologies

Keywords
Biological process	Arabinose catabolism Carbohydrate metabolism
Ligand	ATP-binding Nucleotide-binding
Molecular function	Kinase Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	L-arabinose catabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: UniProtKB-KW ribulokinase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 567	567	Ribulokinase HAMAP MF_00520		PRO_0000198376

Sequences

	Sequence		Length	Mass (Da)
	Q87FK5 [UniParc]. Last modified May 30, 2003. Version 1. Checksum: B303B547EBEA9B8B	FASTA	567	61,789
	10 20 30 40 50 60 MDTINTHQQH VIGLDFGSDS VRALIVNAET GQEVSSSVVY YSRWMKGLYC QPAQSQFRHH 70 80 90 100 110 120 PQDYLDAMTS AIQEVLATVP QTLADSVVGI GVDTTGSTPA PIDENGTVLA LLPEFEHNPN 130 140 150 160 170 180 AMFVLWKDHT SVAKADRINE LAHSGKFTDY TRYVGGVYSS EWFWAKAAWV SEQDEQVAKR 190 200 210 220 230 240 AFSWVELCDW IPAILADTQH PQKLRRGICA AGHKAMWHES WGGLPEQAFL SAISPTLDGI 250 260 270 280 290 300 RDRMFTEVFT SDQAAGYLSK AWAIKLGLPE GIAIAIGEFD CHMGAVGAGA GANDLVKVIG 310 320 330 340 350 360 TSTCDILMVE SQNVGDRTIH GICGQVEGSA MPELLALEAG QSAFGDMYAW FKNVLMWPLQ 370 380 390 400 410 420 AYAEHNPDFA LTAEEIASEL LPMLSQAAEQ QGIDQYTPVA MDWLNGRRTP YANQRLKGAI 430 440 450 460 470 480 CDLNLGSSSP AIFSALVEST AHGAKAIVDC FIEQDVTVER VIAIGGIAQK SPYVMQMCAD 490 500 510 520 530 540 VIGRDIIVVE SDQCCALGAA IFAAVAAGVY PTTKSAQAVM ASPVRQTYSP TPKVQTLRAQ 550 560 RYATYRELGQ HMEQIAEFHQ SQEREDV

References

[1]

"Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae." Makino K., Oshima K., Kurokawa K., Yokoyama K., Uda T., Tagomori K., Iijima Y., Najima M., Nakano M., Yamashita A., Kubota Y., Kimura S., Yasunaga T., Honda T., Shinagawa H., Hattori M., Iida T. Lancet 361:743-749(2003) [PubMed: 12620739] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: RIMD 2210633 / Serotype O3:K6.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BA000032 Genomic DNA. Translation: BAC63017.1.
RefSeq	NP_801184.1. NC_004605.1.
3D structure databases
ProteinModelPortal	Q87FK5.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	1192370.
GenomeReviews	Gene locus VPA1674 in contig BA000032_GR.
KEGG	vpa:VPA1674.
NMPDR	fig|223926.1.peg.4754.
PATRIC	20147729. VBIVibPar50997_4592.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG312681.
OMA	NGRRTPD.
ProtClustDB	PRK04123.
Enzyme and pathway databases
BioCyc	VPAR223926:VPA1674-MONOMER.
Family and domain databases
HAMAP	MF_00520. Ribulokinase. [Tree]
InterPro	IPR000577. Carb_kinase_FGGY. IPR018485. Carb_kinase_FGGY_C. IPR018484. Carb_kinase_FGGY_N. IPR005929. L_ribulokin. [Graphical view]
KO	K00853.
PANTHER	PTHR10196. FGGY_kin. 1 hit.
Pfam	PF02782. FGGY_C. 1 hit. PF00370. FGGY_N. 1 hit. [Graphical view]
TIGRFAMs	TIGR01234. L-ribulokinase. 1 hit.
ProtoNet	Search...

Entry information

Entry name

ARAB_VIBPA

Accession

Primary (citable) accession number: Q87FK5

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 30, 2003
Last sequence update:	May 30, 2003
Last modified:	January 25, 2012
This is version 47 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program