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Protein
Submitted name:

Hemolysin

Gene

tlyC

Organism
Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi424CalciumCombined sources1
Metal bindingi424MagnesiumCombined sources1
Metal bindingi424ManganeseCombined sources1
Metal bindingi425Calcium; via carbonyl oxygenCombined sources1
Metal bindingi426CalciumCombined sources1
Metal bindingi426MagnesiumCombined sources1
Metal bindingi426ManganeseCombined sources1
Metal bindingi431CalciumCombined sources1
Metal bindingi431MagnesiumCombined sources1
Metal bindingi431ManganeseCombined sources1

GO - Molecular functioni

Keywordsi

LigandCalciumCombined sources, MagnesiumCombined sources, ManganeseCombined sources, Metal-bindingCombined sources

Names & Taxonomyi

Protein namesi
Submitted name:
HemolysinImported
Gene namesi
Name:tlyCImported
Ordered Locus Names:PD_0536Imported
OrganismiXylella fastidiosa (strain Temecula1 / ATCC 700964)Imported
Taxonomic identifieri183190 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXylella
Proteomesi
  • UP000002516 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei13 – 34HelicalSequence analysisAdd BLAST22
Transmembranei72 – 96HelicalSequence analysisAdd BLAST25
Transmembranei108 – 129HelicalSequence analysisAdd BLAST22
Transmembranei141 – 164HelicalSequence analysisAdd BLAST24

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei432N6,N6-dimethyllysineCombined sources1

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2OAIX-ray1.80A349-439[»]
2R8DX-ray2.00A349-439[»]
ProteinModelPortaliQ87DZ3
SMRiQ87DZ3
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ87DZ3

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 206CNNM transmembraneInterPro annotationAdd BLAST202
Domaini225 – 284CBSInterPro annotationAdd BLAST60
Domaini289 – 353CBSInterPro annotationAdd BLAST65

Keywords - Domaini

CBS domainPROSITE-ProRule annotation, Transmembrane, Transmembrane helixPROSITE-ProRule annotation

Phylogenomic databases

KOiK03699
OMAiEHTMVRN

Family and domain databases

InterProiView protein in InterPro
IPR000644 CBS_dom
IPR002550 CNNM
IPR036318 FAD-bd_2-like_sf
IPR005170 Transptr-assoc_dom
PfamiView protein in Pfam
PF00571 CBS, 2 hits
PF03471 CorC_HlyC, 1 hit
PF01595 DUF21, 1 hit
SMARTiView protein in SMART
SM00116 CBS, 2 hits
SM01091 CorC_HlyC, 1 hit
SUPFAMiSSF56176 SSF56176, 1 hit
PROSITEiView protein in PROSITE
PS51371 CBS, 2 hits
PS51846 CNNM, 1 hit

Sequencei

Sequence statusi: Complete.

Q87DZ3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRHLRKRRV FELLIVIALI FLNGFFAMSE MSLMTSRKSR LKQMAHSSKH
60 70 80 90 100
AAKALTLAQN PESFLSTVQI GITLIGILTG LFGGDAIGTA IGQWLTALTP
110 120 130 140 150
QLGEYTSIIG KTLSVALITF LTLIFGELVP KRLALTHSEK IASTIAVPMS
160 170 180 190 200
VLARIAAPGV WVLAKSTQLV LRVFGFGKIP SSAVTEEEIR LLVAESHEAG
210 220 230 240 250
VIDDYERNMM NRVMRLGDRT ADSLMTPRNR IAWLDNSADL EHNLEIMREH
260 270 280 290 300
QFSRYPVYRS SDQDIVGILE VKSVITRIDS QTQTTLSLFQ ELCEPVFVSE
310 320 330 340 350
STHALKLLEI FREEQQSMAL VVDEYGEILG LVTISDLMGA VIGRLQNVEN
360 370 380 390 400
TDEDALMVTR EDGSFLIDGT LPIEELREVL GAELPDGEEN NYHTLAGMCI
410 420 430 440
SYFGRIPHVG EYFDWAGWRI EIVDLDGARI DKLLLQRLNK EKNHVPHK
Length:448
Mass (Da):50,057
Last modified:June 1, 2003 - v1
Checksum:iFE8C888965571C3D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009442 Genomic DNA Translation: AAO28409.1

Genome annotation databases

EnsemblBacteriaiAAO28409; AAO28409; PD_0536
KEGGixft:PD_0536

Similar proteinsi

Entry informationi

Entry nameiQ87DZ3_XYLFT
AccessioniPrimary (citable) accession number: Q87DZ3
Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: June 20, 2018
This is version 102 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

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