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Protein
Submitted name:

Hemolysin

Gene

tlyC

Organism
Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi424 – 4241CalciumCombined sources
Metal bindingi424 – 4241MagnesiumCombined sources
Metal bindingi424 – 4241ManganeseCombined sources
Metal bindingi425 – 4251Calcium; via carbonyl oxygenCombined sources
Metal bindingi426 – 4261CalciumCombined sources
Metal bindingi426 – 4261MagnesiumCombined sources
Metal bindingi426 – 4261ManganeseCombined sources
Metal bindingi431 – 4311CalciumCombined sources
Metal bindingi431 – 4311MagnesiumCombined sources
Metal bindingi431 – 4311ManganeseCombined sources

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

CalciumCombined sources, MagnesiumCombined sources, ManganeseCombined sources, Metal-bindingCombined sources

Enzyme and pathway databases

BioCyciXFAS183190:GIX4-536-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
HemolysinImported
Gene namesi
Name:tlyCImported
Ordered Locus Names:PD_0536Imported
OrganismiXylella fastidiosa (strain Temecula1 / ATCC 700964)Imported
Taxonomic identifieri183190 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXylella
Proteomesi
  • UP000002516 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei13 – 3422HelicalSequence analysisAdd
BLAST
Transmembranei72 – 9625HelicalSequence analysisAdd
BLAST
Transmembranei108 – 12922HelicalSequence analysisAdd
BLAST
Transmembranei141 – 16424HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei432 – 4321N6,N6-dimethyllysineCombined sources

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2OAIX-ray1.80A349-439[»]
2R8DX-ray2.00A349-439[»]
ProteinModelPortaliQ87DZ3.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ87DZ3.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini225 – 28460CBSInterPro annotationAdd
BLAST
Domaini289 – 35365CBSInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

KOiK03699.
OMAiTLAGMCI.
OrthoDBiEOG60W7V4.

Family and domain databases

Gene3Di3.30.465.10. 1 hit.
InterProiIPR000644. CBS_dom.
IPR016169. CO_DH_flavot_FAD-bd_sub2.
IPR002550. DUF21.
IPR016166. FAD-bd_2.
IPR005170. Transptr-assoc_dom.
[Graphical view]
PfamiPF00571. CBS. 2 hits.
PF03471. CorC_HlyC. 1 hit.
PF01595. DUF21. 1 hit.
[Graphical view]
SMARTiSM00116. CBS. 2 hits.
SM01091. CorC_HlyC. 1 hit.
[Graphical view]
SUPFAMiSSF56176. SSF56176. 1 hit.
PROSITEiPS51371. CBS. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q87DZ3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPRHLRKRRV FELLIVIALI FLNGFFAMSE MSLMTSRKSR LKQMAHSSKH
60 70 80 90 100
AAKALTLAQN PESFLSTVQI GITLIGILTG LFGGDAIGTA IGQWLTALTP
110 120 130 140 150
QLGEYTSIIG KTLSVALITF LTLIFGELVP KRLALTHSEK IASTIAVPMS
160 170 180 190 200
VLARIAAPGV WVLAKSTQLV LRVFGFGKIP SSAVTEEEIR LLVAESHEAG
210 220 230 240 250
VIDDYERNMM NRVMRLGDRT ADSLMTPRNR IAWLDNSADL EHNLEIMREH
260 270 280 290 300
QFSRYPVYRS SDQDIVGILE VKSVITRIDS QTQTTLSLFQ ELCEPVFVSE
310 320 330 340 350
STHALKLLEI FREEQQSMAL VVDEYGEILG LVTISDLMGA VIGRLQNVEN
360 370 380 390 400
TDEDALMVTR EDGSFLIDGT LPIEELREVL GAELPDGEEN NYHTLAGMCI
410 420 430 440
SYFGRIPHVG EYFDWAGWRI EIVDLDGARI DKLLLQRLNK EKNHVPHK
Length:448
Mass (Da):50,057
Last modified:June 1, 2003 - v1
Checksum:iFE8C888965571C3D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009442 Genomic DNA. Translation: AAO28409.1.

Genome annotation databases

EnsemblBacteriaiAAO28409; AAO28409; PD_0536.
KEGGixft:PD0536.
PATRICi24148771. VBIXylFas71109_0701.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009442 Genomic DNA. Translation: AAO28409.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2OAIX-ray1.80A349-439[»]
2R8DX-ray2.00A349-439[»]
ProteinModelPortaliQ87DZ3.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO28409; AAO28409; PD_0536.
KEGGixft:PD0536.
PATRICi24148771. VBIXylFas71109_0701.

Phylogenomic databases

KOiK03699.
OMAiTLAGMCI.
OrthoDBiEOG60W7V4.

Enzyme and pathway databases

BioCyciXFAS183190:GIX4-536-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ87DZ3.

Family and domain databases

Gene3Di3.30.465.10. 1 hit.
InterProiIPR000644. CBS_dom.
IPR016169. CO_DH_flavot_FAD-bd_sub2.
IPR002550. DUF21.
IPR016166. FAD-bd_2.
IPR005170. Transptr-assoc_dom.
[Graphical view]
PfamiPF00571. CBS. 2 hits.
PF03471. CorC_HlyC. 1 hit.
PF01595. DUF21. 1 hit.
[Graphical view]
SMARTiSM00116. CBS. 2 hits.
SM01091. CorC_HlyC. 1 hit.
[Graphical view]
SUPFAMiSSF56176. SSF56176. 1 hit.
PROSITEiPS51371. CBS. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa."
    Van Sluys M.A., de Oliveira M.C., Monteiro-Vitorello C.B., Miyaki C.Y., Furlan L.R., Camargo L.E., da Silva A.C., Moon D.H., Takita M.A., Lemos E.G., Machado M.A., Ferro M.I., da Silva F.R., Goldman M.H., Goldman G.H., Lemos M.V., El-Dorry H., Tsai S.M.
    , Carrer H., Carraro D.M., de Oliveira R.C., Nunes L.R., Siqueira W.J., Coutinho L.L., Kimura E.T., Ferro E.S., Harakava R., Kuramae E.E., Marino C.L., Giglioti E., Abreu I.L., Alves L.M., do Amaral A.M., Baia G.S., Blanco S.R., Brito M.S., Cannavan F.S., Celestino A.V., da Cunha A.F., Fenille R.C., Ferro J.A., Formighieri E.F., Kishi L.T., Leoni S.G., Oliveira A.R., Rosa V.E.Jr., Sassaki F.T., Sena J.A., de Souza A.A., Truffi D., Tsukumo F., Yanai G.M., Zaros L.G., Civerolo E.L., Simpson A.J., Almeida N.F.Jr., Setubal J.C., Kitajima J.P.
    J. Bacteriol. 185:1018-1026(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Temecula1 / ATCC 700964Imported.
  2. "The structure of transporter associated domain CorC_HlyC from a Xylella fastidiosa Temecula1 hemolysin."
    Cuff M.E., Volkart L., Abdullah J., Binkowski T.A., Joachimiak A.
    Submitted (DEC-2006) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (1.80 ANGSTROMS) OF 349-439 IN COMPLEX WITH CALCIUM, METHYLATION AT LYS-432.
  3. "The structure of transporter associated domain CorC in complex with Mg++ and Mn++ from Xylella fastidiosa."
    Cuff M.E., Volkart L., Joachimiak A.
    Submitted (SEP-2007) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.00 ANGSTROMS) OF 349-439 IN COMPLEX WITH MAGNESIUM AND MANGANESE.

Entry informationi

Entry nameiQ87DZ3_XYLFT
AccessioniPrimary (citable) accession number: Q87DZ3
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: March 16, 2016
This is version 92 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.