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Protein

Superoxide dismutase

Gene

sodM

Organism
Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi27Divalent metal cationUniRule annotation1
Metal bindingi81Divalent metal cationUniRule annotation1
Metal bindingi164Divalent metal cationUniRule annotation1
Metal bindingi168Divalent metal cationUniRule annotation1

GO - Molecular functioni

Keywordsi

Molecular functionOxidoreductaseUniRule annotation
LigandMetal-bindingUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
Gene namesi
Name:sodMImported
Ordered Locus Names:PD_1988Imported
OrganismiXylella fastidiosa (strain Temecula1 / ATCC 700964)Imported
Taxonomic identifieri183190 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXylella
Proteomesi
  • UP000002516 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliQ87A43.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini2 – 89Sod_Fe_NInterPro annotationAdd BLAST88
Domaini96 – 197Sod_Fe_CInterPro annotationAdd BLAST102

Sequence similaritiesi

Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

Phylogenomic databases

KOiK04564.
OMAiDSPLMHG.

Family and domain databases

InterProiView protein in InterPro
IPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
PfamiView protein in Pfam
PF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
PIRSFiPIRSF000349. SODismutase. 1 hit.
PRINTSiPR01703. MNSODISMTASE.
SUPFAMiSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEiView protein in PROSITE
PS00088. SOD_MN. 1 hit.

Sequencei

Sequence statusi: Complete.

Q87A43-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAYTLPILPY AYDALEPHID AQTMEIHYTK HHATYINNLN AALEGTEYAD
60 70 80 90 100
LPIEELLRNL KSLPESLQVP VRNNGGGHAN HSLFWTVMAQ DGGGKPKGEV
110 120 130 140 150
AKAIDQQLGG FETFKDAFTK AALSRFGSGW SLLNVTPSKT LVVESSANQD
160 170 180 190 200
SPLCDGKTSI LCLDVWEHAY YLHYQNRRAD YVNAFYNVIN WDEVERRYVV

AMS
Length:203
Mass (Da):22,769
Last modified:June 1, 2003 - v1
Checksum:i8EA59DCBDB913903
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE009442 Genomic DNA. Translation: AAO29817.1.
RefSeqiWP_004087549.1. NC_004556.1.

Genome annotation databases

EnsemblBacteriaiAAO29817; AAO29817; PD_1988.
KEGGixft:PD_1988.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiQ87A43_XYLFT
AccessioniPrimary (citable) accession number: Q87A43
Entry historyiIntegrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: June 7, 2017
This is version 93 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported