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Protein

Gag polyprotein

Gene
N/A
Organism
Simian immunodeficiency virus - agm.sab-1
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-bindingUniRule annotationSAAS annotation, Viral nucleoproteinUniRule annotation
Biological processHost-virus interaction, Viral budding, Viral budding via the host ESCRT complexesSAAS annotation, Viral release from host cell
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Gag polyproteinUniRule annotationSAAS annotation
OrganismiSimian immunodeficiency virus - agm.sab-1Imported
Taxonomic identifieri349974 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeLentivirusPrimate lentivirus group

Subcellular locationi

  • Virion UniRule annotation
  • Host nucleus UniRule annotation
  • Host cytoplasm UniRule annotation
  • Host cytoplasm UniRule annotationSAAS annotation
  • Host nucleus UniRule annotationSAAS annotation
  • Virion UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Capsid proteinUniRule annotationSAAS annotation, Host cytoplasmUniRule annotationSAAS annotation, Host nucleusUniRule annotationSAAS annotation, Virion

PTM / Processingi

Post-translational modificationi

Gag-Pol polyprotein: Specific enzymatic cleavages by the viral protease yield mature proteins.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliQ87107
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini417 – 432CCHC-typeInterPro annotationAdd BLAST16
Domaini439 – 454CCHC-typeInterPro annotationAdd BLAST16

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili87 – 107Sequence analysisAdd BLAST21

Sequence similaritiesi

Belongs to the primate lentivirus group gag polyprotein family.SAAS annotation

Keywords - Domaini

Coiled coilSequence analysis, RepeatSAAS annotation, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Family and domain databases

Gene3Di1.10.1200.30, 1 hit
1.10.150.90, 1 hit
1.10.375.10, 1 hit
InterProiView protein in InterPro
IPR000721 Gag_p24
IPR000071 Lentvrl_matrix_N
IPR012344 Matrix_HIV/RSV_N
IPR008916 Retrov_capsid_C
IPR008919 Retrov_capsid_N
IPR010999 Retrovr_matrix
IPR001878 Znf_CCHC
IPR036875 Znf_CCHC_sf
PfamiView protein in Pfam
PF00540 Gag_p17, 1 hit
PF00607 Gag_p24, 1 hit
PF00098 zf-CCHC, 2 hits
PRINTSiPR00234 HIV1MATRIX
SMARTiView protein in SMART
SM00343 ZnF_C2HC, 2 hits
SUPFAMiSSF47836 SSF47836, 1 hit
SSF47943 SSF47943, 1 hit
SSF57756 SSF57756, 1 hit
PROSITEiView protein in PROSITE
PS50158 ZF_CCHC, 2 hits

Sequencei

Sequence statusi: Complete.

Q87107-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGASNSVLSG RKLDAFESVR LRPNGKKKYK LRHLVWASKE LDRFSLSANL
60 70 80 90 100
LETKEGVVKI LSVLLPLVPT GSENLIALFN LCCVLACIHA EIKVKDTEEA
110 120 130 140 150
KAKVKEEVPA EMTESATATS SGQTKELQAK KKNEPTVTPS GGSRNYPIVS
160 170 180 190 200
VNNQWVHQPL SPRTLNAWVK VIEEKKFSAE VVPMFSALAE GAIPYDINQM
210 220 230 240 250
LNAVGEHQGA LQIVKDVINE EAADWDLRHP PPQQPPAQGV LRDPQGSDIA
260 270 280 290 300
GTTSTIQEQI EWTTRAQNAV NVGNIYKGWI ILGLQKCVKM YNPVNILDIK
310 320 330 340 350
QGPKEPFKDY VDRFYKALRA EQTDPAVKNW MTQSLLIQNA NPDCKTVLKG
360 370 380 390 400
LGMNPTLEEM LTACQGIGGA QHKARLMAEA MTAAFQQQTV GNIFVQQGAR
410 420 430 440 450
PRGPLGGRGR PLNPNIKCYN CGKPGHLARF CKAPRRQGCW KCGSPDHQMK
460 470 480 490 500
DCQKQVNFLG FGPWGRGKPR NFPLTSIRPT APPMERDYSR PEENWYADRP
510 520 530 540 550
PTRGPGPDDP ATALLKQYAV QGKRQKQQWQ NHSPQQSPYE EAYSSLRSLF

GEDQ
Length:554
Mass (Da):61,535
Last modified:November 1, 1996 - v1
Checksum:i7258653BA58C1D36
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U04005 Genomic DNA Translation: AAA21504.1

Keywords - Coding sequence diversityi

Ribosomal frameshiftingSAAS annotation

Similar proteinsi

Entry informationi

Entry nameiQ87107_SIVSA
AccessioniPrimary (citable) accession number: Q87107
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: March 28, 2018
This is version 119 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health