Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Ly6/PLAUR domain-containing protein 6

Gene

LYPD6

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciZFISH:G66-31043-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ly6/PLAUR domain-containing protein 6
Gene namesi
Name:LYPD6
ORF Names:UNQ3023/PRO9821
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 2

Organism-specific databases

HGNCiHGNC:28751. LYPD6.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Secreted

Pathology & Biotechi

Organism-specific databases

DisGeNETi130574.
OpenTargetsiENSG00000187123.
PharmGKBiPA147357619.

Polymorphism and mutation databases

BioMutaiLYPD6.
DMDMi55583932.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 221 PublicationAdd BLAST22
ChainiPRO_000003617823 – 171Ly6/PLAUR domain-containing protein 6Add BLAST149

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi134N-linked (GlcNAc...)Sequence analysis1
Glycosylationi147N-linked (GlcNAc...)Sequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ86Y78.
PeptideAtlasiQ86Y78.
PRIDEiQ86Y78.

PTM databases

iPTMnetiQ86Y78.
PhosphoSitePlusiQ86Y78.

Expressioni

Gene expression databases

BgeeiENSG00000187123.
CleanExiHS_LYPD6.
ExpressionAtlasiQ86Y78. baseline and differential.
GenevisibleiQ86Y78. HS.

Organism-specific databases

HPAiHPA042805.

Interactioni

Protein-protein interaction databases

BioGridi126242. 30 interactors.
STRINGi9606.ENSP00000334463.

Structurei

3D structure databases

ProteinModelPortaliQ86Y78.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini47 – 141UPAR/Ly6Add BLAST95

Sequence similaritiesi

Contains 1 UPAR/Ly6 domain.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410IJMQ. Eukaryota.
ENOG4111IG8. LUCA.
GeneTreeiENSGT00390000000220.
HOGENOMiHOG000231796.
HOVERGENiHBG054166.
InParanoidiQ86Y78.
OMAiHPHCVSV.
OrthoDBiEOG091G0U3K.
PhylomeDBiQ86Y78.
TreeFamiTF332443.

Family and domain databases

InterProiIPR031574. LYPD6.
[Graphical view]
PANTHERiPTHR31171:SF0. PTHR31171:SF0. 1 hit.

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q86Y78-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MEPGPALAWL LLLSLLADCL KAAQSRDFTV KDIIYLHPST TPYPGGFKCF
60 70 80 90 100
TCEKAADNYE CNRWAPDIYC PRETRYCYTQ HTMEVTGNSI SVTKRCVPLE
110 120 130 140 150
ECLSTGCRDS EHEGHKVCTS CCEGNICNLP LPRNETDATF ATTSPINQTN
160 170
GHPRCMSVIV SCLWLWLGLM L
Length:171
Mass (Da):19,118
Last modified:June 1, 2003 - v1
Checksum:i1BAEEE9CD18F5470
GO
Isoform 2 (identifier: Q86Y78-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     73-76: ETRY → GTMI
     77-171: Missing.

Note: No experimental confirmation available.
Show »
Length:76
Mass (Da):8,514
Checksum:i42AD01EBD5572A37
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti73E → V in BAG54082 (PubMed:14702039).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_03930673 – 76ETRY → GTMI in isoform 2. 1 Publication4
Alternative sequenceiVSP_03930777 – 171Missing in isoform 2. 1 PublicationAdd BLAST95

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY358623 mRNA. Translation: AAQ88986.1.
AK124733 mRNA. Translation: BAG54082.1.
AC007394 Genomic DNA. Translation: AAY14698.1.
CH471058 Genomic DNA. Translation: EAX11539.1.
BC032836 mRNA. Translation: AAH32836.1.
BC047013 mRNA. Translation: AAH47013.1.
AL831852 mRNA. Translation: CAH56278.1.
CCDSiCCDS2188.1. [Q86Y78-1]
RefSeqiNP_001182614.1. NM_001195685.1. [Q86Y78-1]
NP_919298.1. NM_194317.3. [Q86Y78-1]
UniGeneiHs.21929.

Genome annotation databases

EnsembliENST00000334166; ENSP00000334463; ENSG00000187123. [Q86Y78-1]
ENST00000392854; ENSP00000376594; ENSG00000187123. [Q86Y78-2]
ENST00000409381; ENSP00000386413; ENSG00000187123. [Q86Y78-1]
ENST00000418762; ENSP00000396855; ENSG00000187123. [Q86Y78-2]
GeneIDi130574.
KEGGihsa:130574.
UCSCiuc002twy.4. human. [Q86Y78-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY358623 mRNA. Translation: AAQ88986.1.
AK124733 mRNA. Translation: BAG54082.1.
AC007394 Genomic DNA. Translation: AAY14698.1.
CH471058 Genomic DNA. Translation: EAX11539.1.
BC032836 mRNA. Translation: AAH32836.1.
BC047013 mRNA. Translation: AAH47013.1.
AL831852 mRNA. Translation: CAH56278.1.
CCDSiCCDS2188.1. [Q86Y78-1]
RefSeqiNP_001182614.1. NM_001195685.1. [Q86Y78-1]
NP_919298.1. NM_194317.3. [Q86Y78-1]
UniGeneiHs.21929.

3D structure databases

ProteinModelPortaliQ86Y78.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi126242. 30 interactors.
STRINGi9606.ENSP00000334463.

PTM databases

iPTMnetiQ86Y78.
PhosphoSitePlusiQ86Y78.

Polymorphism and mutation databases

BioMutaiLYPD6.
DMDMi55583932.

Proteomic databases

PaxDbiQ86Y78.
PeptideAtlasiQ86Y78.
PRIDEiQ86Y78.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000334166; ENSP00000334463; ENSG00000187123. [Q86Y78-1]
ENST00000392854; ENSP00000376594; ENSG00000187123. [Q86Y78-2]
ENST00000409381; ENSP00000386413; ENSG00000187123. [Q86Y78-1]
ENST00000418762; ENSP00000396855; ENSG00000187123. [Q86Y78-2]
GeneIDi130574.
KEGGihsa:130574.
UCSCiuc002twy.4. human. [Q86Y78-1]

Organism-specific databases

CTDi130574.
DisGeNETi130574.
GeneCardsiLYPD6.
HGNCiHGNC:28751. LYPD6.
HPAiHPA042805.
MIMi613359. gene.
neXtProtiNX_Q86Y78.
OpenTargetsiENSG00000187123.
PharmGKBiPA147357619.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IJMQ. Eukaryota.
ENOG4111IG8. LUCA.
GeneTreeiENSGT00390000000220.
HOGENOMiHOG000231796.
HOVERGENiHBG054166.
InParanoidiQ86Y78.
OMAiHPHCVSV.
OrthoDBiEOG091G0U3K.
PhylomeDBiQ86Y78.
TreeFamiTF332443.

Enzyme and pathway databases

BioCyciZFISH:G66-31043-MONOMER.

Miscellaneous databases

GenomeRNAii130574.
PROiQ86Y78.
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000187123.
CleanExiHS_LYPD6.
ExpressionAtlasiQ86Y78. baseline and differential.
GenevisibleiQ86Y78. HS.

Family and domain databases

InterProiIPR031574. LYPD6.
[Graphical view]
PANTHERiPTHR31171:SF0. PTHR31171:SF0. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiLYPD6_HUMAN
AccessioniPrimary (citable) accession number: Q86Y78
Secondary accession number(s): B3KWC0
, Q4G121, Q53TR3, Q659B1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 9, 2004
Last sequence update: June 1, 2003
Last modified: November 2, 2016
This is version 99 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Human chromosome 2
    Human chromosome 2: entries, gene names and cross-references to MIM
  2. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.