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Protein

NUT family member 1

Gene

NUTM1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sitei5 – 62Breakpoint for translocation to form BRD4-NUT and BRD3-NUT fusion proteins

Names & Taxonomyi

Protein namesi
Recommended name:
NUT family member 1
Alternative name(s):
Nuclear protein in testis
Gene namesi
Name:NUTM1
Synonyms:C15orf55, NUT
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 15

Organism-specific databases

HGNCiHGNC:29919. NUTM1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

Pathology & Biotechi

Involvement in diseasei

A chromosomal aberration involving NUT is found in a rare, aggressive, and lethal carcinoma arising in midline organs of young people. Translocation t(15;19)(q14;p13) with BRD4 which produces a BRD4-NUT fusion protein.

A chromosomal aberration involving NUT is found in a rare, aggressive, and lethal carcinoma arising in midline organs of young people. Translocation t(15;9)(q14;q34) with BRD3 which produces a BRD3-NUT fusion protein.

Organism-specific databases

PharmGKBiPA162378206.

Polymorphism and mutation databases

BioMutaiNUTM1.
DMDMi311033405.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 11321132NUT family member 1PRO_0000311394Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei1026 – 10261Phosphoserine1 Publication
Modified residuei1029 – 10291Phosphoserine1 Publication
Modified residuei1031 – 10311Phosphoserine1 Publication

Post-translational modificationi

Phosphorylation on Ser-1026, Ser-1029 or Ser-1031 is important for cytoplasmic export.1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ86Y26.
PRIDEiQ86Y26.

PTM databases

PhosphoSiteiQ86Y26.

Expressioni

Tissue specificityi

Specifically expressed in testis.1 Publication

Gene expression databases

BgeeiQ86Y26.
CleanExiHS_C15orf55.
GenevisibleiQ86Y26. HS.

Organism-specific databases

HPAiHPA040421.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
Q9H6413EBI-10178410,EBI-10307415
ALOX5P099173EBI-10178410,EBI-79934
CCHCR1Q8TD31-33EBI-10178410,EBI-10175300
FAM161AQ3B8203EBI-10178410,EBI-719941
HSPBAP1Q96EW23EBI-10178410,EBI-720457
IFIT2Q8IZ033EBI-10178410,EBI-746217
KANSL1I3L4J33EBI-10178410,EBI-10178305
KPNA2Q6NVW73EBI-10178410,EBI-9377406
LHX8Q68G743EBI-10178410,EBI-8474075
LMO1P258003EBI-10178410,EBI-8639312
LMO2P257913EBI-10178410,EBI-739696
LMO3Q8TAP43EBI-10178410,EBI-742259
MORN4Q8NDC43EBI-10178410,EBI-10269566
NEBLO760413EBI-10178410,EBI-2880203
P4HA3Q7Z4N83EBI-10178410,EBI-10181968
PRKAA2P546463EBI-10178410,EBI-1383852
PSME4Q149973EBI-10178410,EBI-1236916
RIC8AQ9NPQ8-43EBI-10178410,EBI-9091816
SAMD4AQ9UPU93EBI-10178410,EBI-1047497
SH2D4AQ9H7883EBI-10178410,EBI-747035
TP53BP2Q13625-33EBI-10178410,EBI-10175039
ZMYND10O758003EBI-10178410,EBI-747061
ZNF277Q8WWA63EBI-10178410,EBI-10192794

Protein-protein interaction databases

BioGridi129174. 23 interactions.
IntActiQ86Y26. 23 interactions.
STRINGi9606.ENSP00000329448.

Structurei

3D structure databases

ProteinModelPortaliQ86Y26.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi10 – 182173Pro-richAdd
BLAST

Sequence similaritiesi

Belongs to the NUT family.Curated

Phylogenomic databases

eggNOGiNOG39838.
GeneTreeiENSGT00410000025793.
HOGENOMiHOG000112470.
HOVERGENiHBG107898.
InParanoidiQ86Y26.
OMAiAQSYDQN.
OrthoDBiEOG7F24S5.
PhylomeDBiQ86Y26.
TreeFamiTF337728.

Family and domain databases

InterProiIPR024310. NUT/FAM22.
IPR024313. NUT_C.
IPR024309. NUT_N.
[Graphical view]
PANTHERiPTHR22879. PTHR22879. 1 hit.
PfamiPF12882. NUT_C. 1 hit.
PF12881. NUT_N. 1 hit.
[Graphical view]

Sequences (4)i

Sequence statusi: Complete.

This entry describes 4 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q86Y26-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MASDGASALP GPDMSMKPSA APSPSPALPF LPPTSDPPDH PPREPPPQPI
60 70 80 90 100
MPSVFSPDNP LMLSAFPSSL LVTGDGGPCL SGAGAGKVIV KVKTEGGSAE
110 120 130 140 150
PSQTQNFILT QTALNSTAPG TPCGGLEGPA PPFVTASNVK TILPSKAVGV
160 170 180 190 200
SQEGPPGLPP QPPPPVAQLV PIVPLEKAWP GPHGTTGEGG PVATLSKPSL
210 220 230 240 250
GDRSKISKDV YENFRQWQRY KALARRHLSQ SPDTEALSCF LIPVLRSLAR
260 270 280 290 300
LKPTMTLEEG LPLAVQEWEH TSNFDRMIFY EMAERFMEFE AEEMQIQNTQ
310 320 330 340 350
LMNGSQGLSP ATPLKLDPLG PLASEVCQQP VYIPKKAASK TRAPRRRQRK
360 370 380 390 400
AQRPPAPEAP KEIPPEAVKE YVDIMEWLVG THLATGESDG KQEEEGQQQE
410 420 430 440 450
EEGMYPDPGL LSYINELCSQ KVFVSKVEAV IHPQFLADLL SPEKQRDPLA
460 470 480 490 500
LIEELEQEEG LTLAQLVQKR LMALEEEEDA EAPPSFSGAQ LDSSPSGSVE
510 520 530 540 550
DEDGDGRLRP SPGLQGAGGA ACLGKVSSSG KRAREVHGGQ EQALDSPRGM
560 570 580 590 600
HRDGNTLPSP SSWDLQPELA APQGTPGPLG VERRGSGKVI NQVSLHQDGH
610 620 630 640 650
LGGAGPPGHC LVADRTSEAL PLCWQGGFQP ESTPSLDAGL AELAPLQGQG
660 670 680 690 700
LEKQVLGLQK GQQTGGRGVL PQGKEPLAVP WEGSSGAMWG DDRGTPMAQS
710 720 730 740 750
YDQNPSPRAA GERDDVCLSP GVWLSSEMDA VGLELPVQIE EVIESFQVEK
760 770 780 790 800
CVTEYQEGCQ GLGSRGNISL GPGETLVPGD TESSVIPCGG TVAAAALEKR
810 820 830 840 850
NYCSLPGPLR ANSPPLRSKE NQEQSCETVG HPSDLWAEGC FPLLESGDST
860 870 880 890 900
LGSSKETLPP TCQGNLLIMG TEDASSLPEA SQEAGSRGNS FSPLLETIEP
910 920 930 940 950
VNILDVKDDC GLQLRVSEDT CPLNVHSYDP QGEGRVDPDL SKPKNLAPLQ
960 970 980 990 1000
ESQESYTTGT PKATSSHQGL GSTLPRRGTR NAIVPRETSV SKTHRSADRA
1010 1020 1030 1040 1050
KGKEKKKKEA EEEDEELSNF AYLLASKLSL SPREHPLSPH HASGGQGSQR
1060 1070 1080 1090 1100
ASHLLPAGAK GPSKLPYPVA KSGKRALAGG PAPTEKTPHS GAQLGVPREK
1110 1120 1130
PLALGVVRPS QPRKRRCDSF VTGRRKKRRR SQ
Length:1,132
Mass (Da):120,314
Last modified:November 2, 2010 - v2
Checksum:i5CB58C1B030399F4
GO
Isoform 2 (identifier: Q86Y26-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     235-365: Missing.
     565-573: LQPELAAPQ → PPTNGESQC
     574-1132: Missing.

Show »
Length:442
Mass (Da):46,352
Checksum:i95BABF1664CEE540
GO
Isoform 3 (identifier: Q86Y26-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-4: MASD → MFQRSNQDLKLGPYRKFSALSY

Note: No experimental confirmation available.
Show »
Length:1,150
Mass (Da):122,542
Checksum:i2E4F0F3BB53FC785
GO
Isoform 4 (identifier: Q86Y26-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-1: M → MVVTLGPGPDCLILEASRQPQLVPKPERM

Note: No experimental confirmation available.
Show »
Length:1,160
Mass (Da):123,341
Checksum:iD315516EBE03B8E5
GO

Sequence cautioni

The sequence AAO22237.1 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti332 – 3321Y → H in BAG63912 (PubMed:14702039).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti22 – 221P → L.4 Publications
Corresponds to variant rs374230 [ dbSNP | Ensembl ].
VAR_037239
Natural varianti781 – 7811T → M.
Corresponds to variant rs16959028 [ dbSNP | Ensembl ].
VAR_037240
Natural varianti785 – 7851V → E.
Corresponds to variant rs17236868 [ dbSNP | Ensembl ].
VAR_037241
Natural varianti973 – 9731T → N.
Corresponds to variant rs2279683 [ dbSNP | Ensembl ].
VAR_037242
Natural varianti985 – 9851P → R.
Corresponds to variant rs2279684 [ dbSNP | Ensembl ].
VAR_037243
Natural varianti1113 – 11131R → H.
Corresponds to variant rs2279685 [ dbSNP | Ensembl ].
VAR_037244

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 44MASD → MFQRSNQDLKLGPYRKFSAL SY in isoform 3. 1 PublicationVSP_055644
Alternative sequencei1 – 11M → MVVTLGPGPDCLILEASRQP QLVPKPERM in isoform 4. 1 PublicationVSP_055645
Alternative sequencei235 – 365131Missing in isoform 2. 1 PublicationVSP_029559Add
BLAST
Alternative sequencei565 – 5739LQPELAAPQ → PPTNGESQC in isoform 2. 1 PublicationVSP_029560
Alternative sequencei574 – 1132559Missing in isoform 2. 1 PublicationVSP_029561Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF482429 mRNA. Translation: AAO39268.1.
AY166680 mRNA. Translation: AAO22237.1. Different initiation.
AK098568 mRNA. Translation: BAC05337.1.
AK302656 mRNA. Translation: BAH13770.1.
AK302680 mRNA. Translation: BAG63912.1.
AC021822 Genomic DNA. No translation available.
AC025678 Genomic DNA. No translation available.
CH471125 Genomic DNA. Translation: EAW92304.1.
BC114518 mRNA. Translation: AAI14519.1.
BC114567 mRNA. Translation: AAI14568.1.
AL137416 mRNA. Translation: CAB70729.1.
CCDSiCCDS32190.1. [Q86Y26-1]
CCDS61584.1. [Q86Y26-3]
CCDS61585.1. [Q86Y26-4]
PIRiT46461.
RefSeqiNP_001271221.1. NM_001284292.1.
NP_001271222.1. NM_001284293.1.
NP_786883.1. NM_175741.2.
XP_011519731.1. XM_011521429.1. [Q86Y26-1]
UniGeneiHs.525769.

Genome annotation databases

EnsembliENST00000333756; ENSP00000329448; ENSG00000184507.
ENST00000438749; ENSP00000407031; ENSG00000184507. [Q86Y26-3]
ENST00000537011; ENSP00000444896; ENSG00000184507. [Q86Y26-4]
ENST00000614490; ENSP00000478903; ENSG00000184507.
GeneIDi256646.
KEGGihsa:256646.

Keywords - Coding sequence diversityi

Alternative splicing, Chromosomal rearrangement, Polymorphism

Cross-referencesi

Web resourcesi

Atlas of Genetics and Cytogenetics in Oncology and Haematology

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF482429 mRNA. Translation: AAO39268.1.
AY166680 mRNA. Translation: AAO22237.1. Different initiation.
AK098568 mRNA. Translation: BAC05337.1.
AK302656 mRNA. Translation: BAH13770.1.
AK302680 mRNA. Translation: BAG63912.1.
AC021822 Genomic DNA. No translation available.
AC025678 Genomic DNA. No translation available.
CH471125 Genomic DNA. Translation: EAW92304.1.
BC114518 mRNA. Translation: AAI14519.1.
BC114567 mRNA. Translation: AAI14568.1.
AL137416 mRNA. Translation: CAB70729.1.
CCDSiCCDS32190.1. [Q86Y26-1]
CCDS61584.1. [Q86Y26-3]
CCDS61585.1. [Q86Y26-4]
PIRiT46461.
RefSeqiNP_001271221.1. NM_001284292.1.
NP_001271222.1. NM_001284293.1.
NP_786883.1. NM_175741.2.
XP_011519731.1. XM_011521429.1. [Q86Y26-1]
UniGeneiHs.525769.

3D structure databases

ProteinModelPortaliQ86Y26.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi129174. 23 interactions.
IntActiQ86Y26. 23 interactions.
STRINGi9606.ENSP00000329448.

PTM databases

PhosphoSiteiQ86Y26.

Polymorphism and mutation databases

BioMutaiNUTM1.
DMDMi311033405.

Proteomic databases

PaxDbiQ86Y26.
PRIDEiQ86Y26.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000333756; ENSP00000329448; ENSG00000184507.
ENST00000438749; ENSP00000407031; ENSG00000184507. [Q86Y26-3]
ENST00000537011; ENSP00000444896; ENSG00000184507. [Q86Y26-4]
ENST00000614490; ENSP00000478903; ENSG00000184507.
GeneIDi256646.
KEGGihsa:256646.

Organism-specific databases

CTDi256646.
GeneCardsiGC15P034636.
HGNCiHGNC:29919. NUTM1.
HPAiHPA040421.
MIMi608963. gene.
neXtProtiNX_Q86Y26.
PharmGKBiPA162378206.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG39838.
GeneTreeiENSGT00410000025793.
HOGENOMiHOG000112470.
HOVERGENiHBG107898.
InParanoidiQ86Y26.
OMAiAQSYDQN.
OrthoDBiEOG7F24S5.
PhylomeDBiQ86Y26.
TreeFamiTF337728.

Miscellaneous databases

ChiTaRSiNUTM1. human.
GenomeRNAii256646.
NextBioi35476356.
PROiQ86Y26.
SOURCEiSearch...

Gene expression databases

BgeeiQ86Y26.
CleanExiHS_C15orf55.
GenevisibleiQ86Y26. HS.

Family and domain databases

InterProiIPR024310. NUT/FAM22.
IPR024313. NUT_C.
IPR024309. NUT_N.
[Graphical view]
PANTHERiPTHR22879. PTHR22879. 1 hit.
PfamiPF12882. NUT_C. 1 hit.
PF12881. NUT_N. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "BRD4-NUT fusion oncogene: a novel mechanism in aggressive carcinoma."
    French C.A., Miyoshi I., Kubonishi I., Grier H.E., Perez-Atayde A.R., Fletcher J.A.
    Cancer Res. 63:304-307(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), DISEASE, CHROMOSOMAL TRANSLOCATION WITH BRD4, TISSUE SPECIFICITY, VARIANT LEU-22.
    Tissue: Carcinoma and Testis.
  2. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2; 3 AND 4), VARIANT LEU-22.
    Tissue: Testis.
  3. "Analysis of the DNA sequence and duplication history of human chromosome 15."
    Zody M.C., Garber M., Sharpe T., Young S.K., Rowen L., O'Neill K., Whittaker C.A., Kamal M., Chang J.L., Cuomo C.A., Dewar K., FitzGerald M.G., Kodira C.D., Madan A., Qin S., Yang X., Abbasi N., Abouelleil A.
    , Arachchi H.M., Baradarani L., Birditt B., Bloom S., Bloom T., Borowsky M.L., Burke J., Butler J., Cook A., DeArellano K., DeCaprio D., Dorris L. III, Dors M., Eichler E.E., Engels R., Fahey J., Fleetwood P., Friedman C., Gearin G., Hall J.L., Hensley G., Johnson E., Jones C., Kamat A., Kaur A., Locke D.P., Madan A., Munson G., Jaffe D.B., Lui A., Macdonald P., Mauceli E., Naylor J.W., Nesbitt R., Nicol R., O'Leary S.B., Ratcliffe A., Rounsley S., She X., Sneddon K.M.B., Stewart S., Sougnez C., Stone S.M., Topham K., Vincent D., Wang S., Zimmer A.R., Birren B.W., Hood L., Lander E.S., Nusbaum C.
    Nature 440:671-675(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], VARIANT LEU-22.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANT LEU-22.
  6. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 890-1132 (ISOFORM 1).
    Tissue: Testis.
  7. "BRD-NUT oncoproteins: a family of closely related nuclear proteins that block epithelial differentiation and maintain the growth of carcinoma cells."
    French C.A., Ramirez C.L., Kolmakova J., Hickman T.T., Cameron M.J., Thyne M.E., Kutok J.L., Toretsky J.A., Tadavarthy A.K., Kees U.R., Fletcher J.A., Aster J.C.
    Oncogene 27:2237-2242(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: CHROMOSOMAL TRANSLOCATION WITH BRD3, SUBCELLULAR LOCATION, PHOSPHORYLATION AT SER-1026; SER-1029 AND SER-1031.

Entry informationi

Entry nameiNUTM1_HUMAN
AccessioniPrimary (citable) accession number: Q86Y26
Secondary accession number(s): B4DZ00
, B7Z7Y4, E7EVE8, F5H4I6, Q86YS8, Q8N7F2, Q9NTB3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 13, 2007
Last sequence update: November 2, 2010
Last modified: July 22, 2015
This is version 84 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 15
    Human chromosome 15: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.