Q86WG5 (MTMRD_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 86.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Web links·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Myotubularin-related protein 13 Alternative name(s): SET-binding factor 2 | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1849 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Guanine nucleotide exchange factor (GEF) which may activate RAB28. Promotes the exchange of GDP to GTP, converting inactive GDP-bound Rab proteins into their active GTP-bound form. Ref.10 |
| Subunit structure | Interacts with MTMR2. Ref.8 |
| Subcellular location | Cytoplasm. Membrane; Peripheral membrane protein. Note: Associated with membranes. Ref.8 |
| Tissue specificity | Widely expressed. Expressed in spinal cord. Ref.1 |
| Involvement in disease | Charcot-Marie-Tooth disease 4B2 (CMT4B2) [MIM:604563]: A recessive demyelinating form of Charcot-Marie-Tooth disease, a disorder of the peripheral nervous system, characterized by progressive weakness and atrophy, initially of the peroneal muscles and later of the distal muscles of the arms. Charcot-Marie-Tooth disease is classified in two main groups on the basis of electrophysiologic properties and histopathology: primary peripheral demyelinating neuropathies (designated CMT1 when they are dominantly inherited) and primary peripheral axonal neuropathies (CMT2). Demyelinating neuropathies are characterized by severely reduced nerve conduction velocities (less than 38 m/sec), segmental demyelination and remyelination with onion bulb formations on nerve biopsy, slowly progressive distal muscle atrophy and weakness, absent deep tendon reflexes, and hollow feet. By convention autosomal recessive forms of demyelinating Charcot-Marie-Tooth disease are designated CMT4. |
| Sequence similarities | Belongs to the protein-tyrosine phosphatase family. Non-receptor class myotubularin subfamily. Contains 1 dDENN domain. Contains 1 DENN domain. Contains 1 GRAM domain. Contains 1 myotubularin phosphatase domain. Contains 1 PH domain. Contains 1 uDENN domain. |
| Caution | In contrast to other members of the family, it lacks a canonical protein-tyrosine phosphatase domain and lacks the conserved Cys residue in position 1410 which is replaced by a Leu residue. It therefore probably does not have phosphatase activity. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Cytoplasm Membrane |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Disease | Charcot-Marie-Tooth disease Neuropathy |
| Molecular function | Guanine-nucleotide releasing factor |
| PTM | Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | myelination Non-traceable author statement Ref.8. Source: UniProtKB protein tetramerizationInferred from electronic annotation. Source: Compara |
| Cellular_component | membrane Inferred from direct assay Ref.8. Source: UniProtKB vacuolar membraneInferred from electronic annotation. Source: Compara |
| Molecular_function | Rab guanyl-nucleotide exchange factor activity Inferred from direct assay Ref.10. Source: UniProtKB phosphatase activityInferred from electronic annotation. Source: InterPro phosphatase regulator activityInferred from electronic annotation. Source: Compara phosphatidylinositol bindingInferred from electronic annotation. Source: Compara |
| Complete GO annotation... | |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q86WG5-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 3 (identifier: Q86WG5-3) The sequence of this isoform differs from the canonical sequence as follows: 1152-1152: S → R 1153-1849: Missing. | ||||||
| Note: No experimental confirmation available. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1849 | 1849 | Myotubularin-related protein 13 | PRO_0000094945 | |||||
Regions | |||||||||
| Domain | 18 – 86 | 69 | UDENN | ||||||
| Domain | 116 – 298 | 183 | DENN | ||||||
| Domain | 351 – 420 | 70 | dDENN | ||||||
| Domain | 871 – 957 | 87 | GRAM | ||||||
| Domain | 1108 – 1584 | 477 | Myotubularin phosphatase | ||||||
| Domain | 1743 – 1847 | 105 | PH | ||||||
| Region | 1630 – 1683 | 54 | Interaction with MTMR2 | ||||||
Amino acid modifications | |||||||||
| Modified residue | 1127 | 1 | Phosphoserine Ref.11 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1152 | 1 | S → R in isoform 3. | VSP_017157 | |||||
| Alternative sequence | 1153 – 1849 | 697 | Missing in isoform 3. | VSP_017158 | |||||
| Natural variant | 303 | 1 | P → L. Corresponds to variant rs16907355 [ dbSNP | Ensembl ]. | VAR_051766 | |||||
| Natural variant | 679 | 1 | E → K. Corresponds to variant rs7102464 [ dbSNP | Ensembl ]. | VAR_051767 | |||||
| Natural variant | 1216 | 1 | Q → E. Ref.2 Corresponds to variant rs12574508 [ dbSNP | Ensembl ]. | VAR_051768 | |||||
Experimental info | |||||||||
| Sequence conflict | 1586 | 1 | E → G in CAH18167. Ref.4 | ||||||
| Sequence conflict | 1665 | 1 | E → V in CAH18167. Ref.4 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Mutation of the SBF2 gene, encoding a novel member of the myotubularin family, in Charcot-Marie-Tooth neuropathy type 4B2/11p15." Senderek J., Bergmann C., Weber S., Ketelsen U.-P., Schorle H., Rudnik-Schoeneborn S., Buettner R., Buchheim E., Zerres K. Hum. Mol. Genet. 12:349-356(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), INVOLVEMENT IN CMT4B2, TISSUE SPECIFICITY. Tissue: Sciatic nerve. |
| [2] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANT GLU-1216. Tissue: Brain, Cervix, Duodenum and Placenta. |
| [3] | "Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro." Nagase T., Kikuno R., Hattori A., Kondo Y., Okumura K., Ohara O. DNA Res. 7:347-355(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 30-1152 (ISOFORM 3). |
| [4] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1187-1849 (ISOFORM 1). Tissue: Fetal brain and Liver. |
| [5] | "Mutations in MTMR13, a new pseudophosphatase homologue of MTMR2 and Sbf1, in two families with an autosomal recessive demyelinating form of Charcot-Marie-Tooth disease associated with early-onset glaucoma." Azzedine H., Bolino A., Taieb T., Birouk N., Di Duca M., Bouhouche A., Benamou S., Mrabet A., Hammadouche T., Chkili T., Gouider R., Ravazzolo R., Brice A., Laporte J., LeGuern E. Am. J. Hum. Genet. 72:1141-1153(2003) [PubMed] [Europe PMC] [Abstract] Cited for: INVOLVEMENT IN CMT4B2. |
| [6] | "SET binding factor 2 (SBF2) mutation causes CMT4B with juvenile onset glaucoma." Hirano R., Takashima H., Umehara F., Arimura H., Michizono K., Okamoto Y., Nakagawa M., Boerkoel C.F., Lupski J.R., Osame M., Arimura K. Neurology 63:577-580(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INVOLVEMENT IN CMT4B2. |
| [7] | "A new SBF2 mutation in a family with recessive demyelinating Charcot-Marie-Tooth (CMT4B2)." Conforti F.L., Muglia M., Mazzei R., Patitucci A., Valentino P., Magariello A., Sprovieri T., Bono F., Bergmann C., Gabriele A.L., Peluso G., Nistico R., Senderek J., Quattrone A. Neurology 63:1327-1328(2004) [PubMed] [Europe PMC] [Abstract] Cited for: INVOLVEMENT IN CMT4B2. |
| [8] | "The phosphoinositide-3-phosphatase MTMR2 associates with MTMR13, a membrane-associated pseudophosphatase also mutated in type 4B Charcot-Marie-Tooth disease." Robinson F.L., Dixon J.E. J. Biol. Chem. 280:31699-31707(2005) [PubMed] [Europe PMC] [Abstract] Cited for: INTERACTION WITH MTMR2, SUBCELLULAR LOCATION. |
| [9] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. Tissue: Cervix carcinoma. |
| [10] | "Family-wide characterization of the DENN domain Rab GDP-GTP exchange factors." Yoshimura S., Gerondopoulos A., Linford A., Rigden D.J., Barr F.A. J. Cell Biol. 191:367-381(2010) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION AS GUANYL-NUCLEOTIDE EXCHANGE FACTOR. |
| [11] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1127, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| + | Additional computationally mapped references. |
Web resources
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AY234241 mRNA. Translation: AAO62733.1. BC011143 mRNA. Translation: AAH11143.1. BC043389 mRNA. Translation: AAH43389.1. BC053867 mRNA. Translation: AAH53867.1. BC063656 mRNA. Translation: AAH63656.1. BC101466 mRNA. Translation: AAI01467.1. AB051553 mRNA. Translation: BAB21857.1. BX538184 mRNA. Translation: CAD98056.1. CR749312 mRNA. Translation: CAH18167.1. |
| IPI | IPI00654703. IPI00719299. |
| RefSeq | NP_112224.1. NM_030962.3. |
| UniGene | Hs.577252. |
3D structure databases | |
| ProteinModelPortal | Q86WG5. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q86WG5. 1 interaction. |
PTM databases | |
| PhosphoSite | Q86WG5. |
Polymorphism databases | |
| DMDM | 74750502. |
Proteomic databases | |
| PaxDb | Q86WG5. |
| PRIDE | Q86WG5. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000256190; ENSP00000256190; ENSG00000133812. |
| GeneID | 81846. |
| KEGG | hsa:81846. |
| UCSC | uc001mib.2. human. uc001mif.3. human. |
Organism-specific databases | |
| CTD | 81846. |
| GeneCards | GC11M009800. |
| HGNC | HGNC:2135. SBF2. |
| HPA | HPA050933. |
| MIM | 604563. phenotype. 607697. gene. |
| neXtProt | NX_Q86WG5. |
| Orphanet | 99956. Charcot-Marie-Tooth disease type 4B2. |
| PharmGKB | PA26649. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG315534. |
| HOVERGEN | HBG052527. |
| InParanoid | Q86WG5. |
| OMA | IGVHSVF. |
| OrthoDB | EOG48D0TF. |
| PhylomeDB | Q86WG5. |
Gene expression databases | |
| ArrayExpress | Q86WG5. |
| Bgee | Q86WG5. |
| Genevestigator | Q86WG5. |
| GermOnline | ENSG00000133812. Homo sapiens. |
Family and domain databases | |
| Gene3D | 2.30.29.30. 2 hits. |
| InterPro | IPR005112. dDENN_dom. IPR001194. DENN_dom. IPR004182. GRAM. IPR010569. Myotub-related. IPR017906. Myotubularin_phosphatase_dom. IPR011993. PH_like_dom. IPR001849. Pleckstrin_homology. IPR022096. SBF2. IPR005113. uDENN_dom. [Graphical view] |
| Pfam | PF03455. dDENN. 1 hit. PF02141. DENN. 1 hit. PF02893. GRAM. 1 hit. PF06602. Myotub-related. 1 hit. PF00169. PH. 1 hit. PF12335. SBF2. 1 hit. PF03456. uDENN. 1 hit. [Graphical view] |
| SMART | SM00801. dDENN. 1 hit. SM00799. DENN. 1 hit. SM00568. GRAM. 1 hit. SM00233. PH. 1 hit. SM00800. uDENN. 1 hit. [Graphical view] |
| PROSITE | PS50947. DDENN. 1 hit. PS50211. DENN. 1 hit. PS50003. PH_DOMAIN. 1 hit. PS51339. PPASE_MYOTUBULARIN. 1 hit. PS50946. UDENN. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | SBF2. human. |
| GenomeRNAi | 81846. |
| NextBio | 72146. |
| SOURCE | Search... |
Entry information
| Entry name | MTMRD_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q86WG5 Secondary accession number(s): Q3MJF0 Q9C097 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 11 Human chromosome 11: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
