Q86WD7 (SPA9_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 86.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Serpin A9 Alternative name(s): Centerin Germinal center B-cell-expressed transcript 1 protein | ||||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||||
| Taxonomic identifier | 9606 [NCBI] | ||||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 417 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Protease inhibitor that inhibits trypsin and trypsin-like serine proteases (in vitro). Inhibits plasmin and thrombin with lower efficiency (in vitro). Ref.7 |
| Subcellular location | Isoform 1: Secreted Ref.8 Ref.9. Isoform 2: Cytoplasm Probable Ref.8 Ref.9. Isoform 3: Cytoplasm Probable Ref.8 Ref.9. Isoform 4: Cytoplasm Probable Ref.8 Ref.9. Isoform 5: Cytoplasm Probable Ref.8 Ref.9. Isoform 6: Cytoplasm Probable Ref.8 Ref.9. Isoform 7: Membrane; Single-pass type II membrane protein Potential Ref.8 Ref.9. |
| Tissue specificity | Highly expressed in normal germinal center (GC) B-cells and GC B-cell-derived malignancies. Ref.1 Ref.7 Ref.8 Ref.9 |
| Sequence similarities | Belongs to the serpin family. |
| Sequence caution | The sequence AAO32345.1 differs from that shown. Reason: Erroneous translation. Wrong choice of CDS. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Cytoplasm Membrane Secreted |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | Signal |
| Molecular function | Protease inhibitor Serine protease inhibitor |
| PTM | Glycoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | regulation of proteolysis Inferred from Biological aspect of Ancestor. Source: RefGenome |
| Cellular_component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell extracellular regionInferred from electronic annotation. Source: UniProtKB-SubCell membraneInferred from electronic annotation. Source: UniProtKB-SubCell |
| Molecular_function | serine-type endopeptidase inhibitor activity Inferred from direct assay Ref.6. Source: UniProtKB |
| Complete GO annotation... | |
Alternative products
| This entry describes 7 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q86WD7-1) Also known as: A; This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q86WD7-2) Also known as: B; The sequence of this isoform differs from the canonical sequence as follows: 1-1: M → MQGQGRRRGTCKDIFCSKM 73-172: Missing. | ||||||
| Isoform 3 (identifier: Q86WD7-3) Also known as: SERPINA11a; The sequence of this isoform differs from the canonical sequence as follows: 1-417: MASYLYGVLF...LGKVENPTKS → MRSAGGRGEI...KFLGQCQEAV | ||||||
| Note: May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay. No experimental confirmation available. | ||||||
| Isoform 4 (identifier: Q86WD7-4) Also known as: SERPINA11b; The sequence of this isoform differs from the canonical sequence as follows: 1-57: MASYLYGVLF...NTDFAFRLYR → MRSAGGRGEI...RTGQEKRNLQ 351-352: AT → VS 353-417: Missing. | ||||||
| Isoform 5 (identifier: Q86WD7-5) The sequence of this isoform differs from the canonical sequence as follows: 1-131: Missing. | ||||||
| Isoform 6 (identifier: Q86WD7-6) The sequence of this isoform differs from the canonical sequence as follows: 1-80: Missing. | ||||||
| Isoform 7 (identifier: Q86WD7-7) The sequence of this isoform differs from the canonical sequence as follows: 1-1: M → MQGQGRRRGTCKDIFCSKM |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 23 | 23 | Potential | ||||||
| Chain | 24 – 417 | 394 | Serpin A9 | PRO_0000041971 | |||||
Amino acid modifications | |||||||||
| Glycosylation | 101 | 1 | N-linked (GlcNAc...) Potential | ||||||
| Glycosylation | 390 | 1 | N-linked (GlcNAc...) Potential | ||||||
Natural variations | |||||||||
| Alternative sequence | 1 – 417 | 417 | MASYL…NPTKS → MRSAGGRGEIKVRRELQPSK QVSGLTNHARTGQEKRNLQR HILFQNGILPLWSTLCCWPL CSNLLCVPGQCPQCIPPPFL HKEHPCLTGVFPQHRLCLPP IPQAGFGDPESEHLLLPCEC LHFPGHALPWGPLSHQDPDS PGPGLQPHTHTRVCHPPGLP APGSLTDCSQQRPDLEDGKC PLRQEGAAAAGKFLGQCQEA V in isoform 3. | VSP_041492 | |||||
| Alternative sequence | 1 – 131 | 131 | Missing in isoform 5. | VSP_041488 | |||||
| Alternative sequence | 1 – 80 | 80 | Missing in isoform 6. | VSP_041489 | |||||
| Alternative sequence | 1 – 57 | 57 | MASYL…FRLYR → MRSAGGRGEIKVRRELQPSK QVSGLTNHARTGQEKRNLQ in isoform 4. | VSP_041490 | |||||
| Alternative sequence | 1 | 1 | M → MQGQGRRRGTCKDIFCSKM in isoform 2 and isoform 7. | VSP_041491 | |||||
| Alternative sequence | 73 – 172 | 100 | Missing in isoform 2. | VSP_041493 | |||||
| Alternative sequence | 351 – 352 | 2 | AT → VS in isoform 4. | VSP_041494 | |||||
| Alternative sequence | 353 – 417 | 65 | Missing in isoform 4. | VSP_041495 | |||||
| Natural variant | 24 | 1 | A → V. Corresponds to variant rs4905204 [ dbSNP | Ensembl ]. | VAR_047344 | |||||
| Natural variant | 218 | 1 | P → L. Ref.3 Corresponds to variant rs17090921 [ dbSNP | Ensembl ]. | VAR_047345 | |||||
| Natural variant | 236 | 1 | H → Q. Ref.3 Corresponds to variant rs28583900 [ dbSNP | Ensembl ]. | VAR_047346 | |||||
| Natural variant | 292 | 1 | R → I. Ref.3 Corresponds to variant rs28618118 [ dbSNP | Ensembl ]. | VAR_047347 | |||||
| Natural variant | 330 | 1 | V → A. Ref.1 Ref.3 Corresponds to variant rs11628722 [ dbSNP | Ensembl ]. | VAR_047348 | |||||
Experimental info | |||||||||
| Sequence conflict | 23 | 1 | P → L in AAO65242. Ref.1 | ||||||
| Sequence conflict | 23 | 1 | P → L in AAO65243. Ref.1 | ||||||
| Sequence conflict | 23 | 1 | P → L in AAQ89063. Ref.3 | ||||||
| Sequence conflict | 93 | 1 | Q → E in BAG62686. Ref.4 | ||||||
| Sequence conflict | 174 | 1 | R → G in AAO65245. Ref.1 | ||||||
| Sequence conflict | 207 | 1 | F → S in BAG62686. Ref.4 | ||||||
| Sequence conflict | 224 | 1 | N → D in AAO65242. Ref.1 | ||||||
| Sequence conflict | 228 | 1 | L → P in AAO65244. Ref.1 | ||||||
| Sequence conflict | 371 | 1 | T → A in AAO65242. Ref.1 | ||||||
| Sequence conflict | 411 | 1 | V → A in AAO65243. Ref.1 | ||||||
| Sequence conflict | 411 | 1 | V → A in BAG62686. Ref.4 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "Two newly characterized germinal center B-cell-associated genes, GCET1 and GCET2, have differential expression in normal and neoplastic B cells." Pan Z., Shen Y., Du C., Zhou G., Rosenwald A., Staudt L.M., Greiner T.C., McKeithan T.W., Chan W.C. Am. J. Pathol. 163:135-144(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 2; 5; 6 AND 7), VARIANT ALA-330, TISSUE SPECIFICITY. |
| [2] | Ju S.G., Zhang X.G. Submitted (NOV-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 3 AND 4). Tissue: Blood. |
| [3] | "The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment." Clark H.F., Gurney A.L., Abaya E., Baker K., Baldwin D.T., Brush J., Chen J., Chow B., Chui C., Crowley C., Currell B., Deuel B., Dowd P., Eaton D., Foster J.S., Grimaldi C., Gu Q., Hass P.E. Gray A.M.Genome Res. 13:2265-2270(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), VARIANTS LEU-218; GLN-236; ILE-292 AND ALA-330. |
| [4] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 7). Tissue: Spleen. |
| [5] | "The DNA sequence and analysis of human chromosome 14." Heilig R., Eckenberg R., Petit J.-L., Fonknechten N., Da Silva C., Cattolico L., Levy M., Barbe V., De Berardinis V., Ureta-Vidal A., Pelletier E., Vico V., Anthouard V., Rowen L., Madan A., Qin S., Sun H., Du H. Weissenbach J.Nature 421:601-607(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 7). Tissue: Lymph. |
| [7] | "Molecular characterization of centerin, a germinal centre cell serpin." Paterson M.A., Horvath A.J., Pike R.N., Coughlin P.B. Biochem. J. 405:489-494(2007) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, MASS SPECTROMETRY, TISSUE SPECIFICITY. |
| [8] | "Expression of the serpin centerin defines a germinal center phenotype in B-cell lymphomas." Paterson M.A., Hosking P.S., Coughlin P.B. Am. J. Clin. Pathol. 130:117-126(2008) [PubMed] [Europe PMC] [Abstract] Cited for: TISSUE SPECIFICITY, SUBCELLULAR LOCATION. |
| [9] | "Gcet1 (centerin), a highly restricted marker for a subset of germinal center-derived lymphomas." Montes-Moreno S., Roncador G., Maestre L., Martinez N., Sanchez-Verde L., Camacho F.I., Cannata J., Martinez-Torrecuadrada J.L., Shen Y., Chan W.C., Piris M.A. Blood 111:351-358(2008) [PubMed] [Europe PMC] [Abstract] Cited for: TISSUE SPECIFICITY, SUBCELLULAR LOCATION. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AY220118 mRNA. Translation: AAO65242.1. AY220119 mRNA. Translation: AAO65243.1. AY220120 mRNA. Translation: AAO65244.1. AY220121 mRNA. Translation: AAO65245.1. AY185496 mRNA. Translation: AAO32345.1. Sequence problems. AY185497 mRNA. Translation: AAO32346.1. AY358700 mRNA. Translation: AAQ89063.1. AK301082 mRNA. Translation: BAG62686.1. AL132708 Genomic DNA. No translation available. BC111498 mRNA. Translation: AAI11499.1. |
| IPI | IPI00395944. IPI00651635. IPI00651735. IPI00941036. IPI00942892. IPI00944611. IPI01014997. |
| RefSeq | NP_001035983.1. NM_001042518.1. NP_783866.2. NM_175739.3. |
| UniGene | Hs.317970. |
3D structure databases | |
| ProteinModelPortal | Q86WD7. |
| ModBase | Search... |
Protein family/group databases | |
| MEROPS | I04.082. |
PTM databases | |
| PhosphoSite | Q86WD7. |
Polymorphism databases | |
| DMDM | 215274213. |
Proteomic databases | |
| PaxDb | Q86WD7. |
| PRIDE | Q86WD7. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000298845; ENSP00000298845; ENSG00000170054. ENST00000337425; ENSP00000337133; ENSG00000170054. ENST00000380365; ENSP00000369723; ENSG00000170054. ENST00000424550; ENSP00000409012; ENSG00000170054. ENST00000448305; ENSP00000414092; ENSG00000170054. ENST00000538527; ENSP00000441511; ENSG00000170054. ENST00000546329; ENSP00000445476; ENSG00000170054. |
| GeneID | 327657. |
| KEGG | hsa:327657. |
| UCSC | uc001yde.3. human. uc001ydf.3. human. uc001ydg.3. human. uc001ydi.1. human. |
Organism-specific databases | |
| CTD | 327657. |
| GeneCards | GC14M094929. |
| H-InvDB | HIX0037697. |
| HGNC | HGNC:15995. SERPINA9. |
| neXtProt | NX_Q86WD7. |
| PharmGKB | PA38077. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | COG4826. |
| HOVERGEN | HBG005957. |
| InParanoid | Q86WD7. |
| OMA | GFQHLVH. |
Gene expression databases | |
| Bgee | Q86WD7. |
| CleanEx | HS_SERPINA11. HS_SERPINA9. |
| Genevestigator | Q86WD7. |
| GermOnline | ENSG00000170054. Homo sapiens. |
Family and domain databases | |
| InterPro | IPR000295. Prot_inh_Lserp2. IPR023795. Protease_inhib_I4_serpin_CS. IPR023796. Serpin_dom. IPR000215. Serpin_fam. [Graphical view] |
| PANTHER | PTHR11461. PTHR11461. 1 hit. |
| Pfam | PF00079. Serpin. 1 hit. [Graphical view] |
| PRINTS | PR00780. LEUSERPINII. |
| SMART | SM00093. SERPIN. 1 hit. [Graphical view] |
| SUPFAM | SSF56574. Prot_inh_serpin. 1 hit. |
| PROSITE | PS00284. SERPIN. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| GenomeRNAi | 327657. |
| NextBio | 96722. |
Entry information
| Entry name | SPA9_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q86WD7 Secondary accession number(s): B4DVH4 Q86YP7 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 14 Human chromosome 14: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| SIMILARITY comments Index of protein domains and families |

Clusters with
