ID LCA5_HUMAN Reviewed; 697 AA. AC Q86VQ0; E1P542; Q9BWX7; DT 02-AUG-2005, integrated into UniProtKB/Swiss-Prot. DT 02-AUG-2005, sequence version 2. DT 24-JAN-2024, entry version 159. DE RecName: Full=Lebercilin {ECO:0000303|PubMed:17546029}; DE AltName: Full=Leber congenital amaurosis 5 protein; GN Name=LCA5; Synonyms=C6orf152; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=14574404; DOI=10.1038/nature02055; RA Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., RA Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., RA Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., RA Andrews T.D., Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., RA Banerjee R., Barker D.J., Barlow K.F., Bates K., Beare D.M., Beasley H., RA Beasley O., Bird C.P., Blakey S.E., Bray-Allen S., Brook J., Brown A.J., RA Brown J.Y., Burford D.C., Burrill W., Burton J., Carder C., Carter N.P., RA Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V., RA Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J., RA Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E., Ellington A.E., RA Evans K.A., Faulkner L., Francis M.D., Frankish A., Frankland J., RA French L., Garner P., Garnett J., Ghori M.J., Gilby L.M., Gillson C.J., RA Glithero R.J., Grafham D.V., Grant M., Gribble S., Griffiths C., RA Griffiths M.N.D., Hall R., Halls K.S., Hammond S., Harley J.L., Hart E.A., RA Heath P.D., Heathcott R., Holmes S.J., Howden P.J., Howe K.L., Howell G.R., RA Huckle E., Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., RA Joy A.A., Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., RA Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., RA Lloyd D.M., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., RA Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K., McMurray A., RA Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T., Novik K.L., RA Oliver K., Overton-Larty E.K., Parker A., Patel R., Pearce A.V., Peck A.I., RA Phillimore B.J.C.T., Phillips S., Plumb R.W., Porter K.M., Ramsey Y., RA Ranby S.A., Rice C.M., Ross M.T., Searle S.M., Sehra H.K., Sheridan E., RA Skuce C.D., Smith S., Smith M., Spraggon L., Squares S.L., Steward C.A., RA Sycamore N., Tamlyn-Hall G., Tester J., Theaker A.J., Thomas D.W., RA Thorpe A., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., RA West A.P., White S.S., Whitehead S.L., Whittaker H., Wild A., Willey D.J., RA Wilmer T.E., Wood J.M., Wray P.W., Wyatt J.C., Young L., Younger R.M., RA Bentley D.R., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Dunham I., RA Rogers J., Beck S.; RT "The DNA sequence and analysis of human chromosome 6."; RL Nature 425:805-811(2003). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], AND VARIANT SER-24. RA Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., RA Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., RA Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., RA Turner R., Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., RA Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., RA Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., RA Hunkapiller M.W., Myers E.W., Venter J.C.; RL Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND VARIANT SER-24. RC TISSUE=Testis; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [4] RP INVOLVEMENT IN LCA5. RX PubMed=18000884; DOI=10.1002/humu.9513; RA Gerber S., Hanein S., Perrault I., Delphin N., Aboussair N., Leowski C., RA Dufier J.-L., Roche O., Munnich A., Kaplan J., Rozet J.-M.; RT "Mutations in LCA5 are an uncommon cause of Leber congenital amaurosis RT (LCA) type II."; RL Hum. Mutat. 28:1245-1245(2007). RN [5] RP SUBCELLULAR LOCATION, INVOLVEMENT IN LCA5, AND TISSUE SPECIFICITY. RX PubMed=17546029; DOI=10.1038/ng2066; RA den Hollander A.I., Koenekoop R.K., Mohamed M.D., Arts H.H., Boldt K., RA Towns K.V., Sedmak T., Beer M., Nagel-Wolfrum K., McKibbin M., RA Dharmaraj S., Lopez I., Ivings L., Williams G.A., Springell K., Woods C.G., RA Jafri H., Rashid Y., Strom T.M., van der Zwaag B., Gosens I., RA Kersten F.F.J., van Wijk E., Veltman J.A., Zonneveld M.N., RA van Beersum S.E.C., Maumenee I.H., Wolfrum U., Cheetham M.E., Ueffing M., RA Cremers F.P.M., Inglehearn C.F., Roepman R.; RT "Mutations in LCA5, encoding the ciliary protein lebercilin, cause Leber RT congenital amaurosis."; RL Nat. Genet. 39:889-895(2007). RN [6] RP INVOLVEMENT IN LCA5. RX PubMed=18334959; RA Ramprasad V.L., Soumittra N., Nancarrow D., Sen P., McKibbin M., RA Williams G.A., Arokiasamy T., Lakshmipathy P., Inglehearn C.F., RA Kumaramanickavel G.; RT "Identification of a novel splice-site mutation in the lebercilin (LCA5) RT gene causing Leber congenital amaurosis."; RL Mol. Vis. 14:481-486(2008). RN [7] RP INTERACTION WITH OFD1. RX PubMed=19800048; DOI=10.1016/j.ajhg.2009.09.002; RA Coene K.L., Roepman R., Doherty D., Afroze B., Kroes H.Y., Letteboer S.J., RA Ngu L.H., Budny B., van Wijk E., Gorden N.T., Azhimi M., RA Thauvin-Robinet C., Veltman J.A., Boink M., Kleefstra T., Cremers F.P., RA van Bokhoven H., de Brouwer A.P.; RT "OFD1 is mutated in X-linked Joubert syndrome and interacts with LCA5- RT encoded lebercilin."; RL Am. J. Hum. Genet. 85:465-481(2009). RN [8] RP INTERACTION WITH NINL. RX PubMed=18826961; DOI=10.1093/hmg/ddn312; RA van Wijk E., Kersten F.F.J., Kartono A., Mans D.A., Brandwijk K., RA Letteboer S.J.F., Peters T.A., Maerker T., Yan X., Cremers C.W.R.J., RA Cremers F.P.M., Wolfrum U., Roepman R., Kremer H.; RT "Usher syndrome and Leber congenital amaurosis are molecularly linked via a RT novel isoform of the centrosomal ninein-like protein."; RL Hum. Mol. Genet. 18:51-64(2009). RN [9] RP INTERACTION WITH FAM161A. RX PubMed=22940612; DOI=10.1093/hmg/dds368; RA Di Gioia S.A., Letteboer S.J., Kostic C., Bandah-Rozenfeld D., RA Hetterschijt L., Sharon D., Arsenijevic Y., Roepman R., Rivolta C.; RT "FAM161A, associated with retinitis pigmentosa, is a component of the RT cilia-basal body complex and interacts with proteins involved in RT ciliopathies."; RL Hum. Mol. Genet. 21:5174-5184(2012). RN [10] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-45, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Erythroleukemia; RX PubMed=23186163; DOI=10.1021/pr300630k; RA Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J., RA Mohammed S.; RT "Toward a comprehensive characterization of a human cancer cell RT phosphoproteome."; RL J. Proteome Res. 12:260-271(2013). RN [11] RP SUBCELLULAR LOCATION, AND INTERACTION WITH COMPONENTS OF THE IFT COMPLEX B. RX PubMed=21606596; DOI=10.1172/jci45627; RA Boldt K., Mans D.A., Won J., van Reeuwijk J., Vogt A., Kinkl N., RA Letteboer S.J., Hicks W.L., Hurd R.E., Naggert J.K., Texier Y., RA den Hollander A.I., Koenekoop R.K., Bennett J., Cremers F.P., RA Gloeckner C.J., Nishina P.M., Roepman R., Ueffing M.; RT "Disruption of intraflagellar protein transport in photoreceptor cilia RT causes Leber congenital amaurosis in humans and mice."; RL J. Clin. Invest. 121:2169-2180(2011). RN [12] RP VARIANT LCA5 GLY-218. RX PubMed=28418496; DOI=10.1167/iovs.17-21424; RA Li L., Chen Y., Jiao X., Jin C., Jiang D., Tanwar M., Ma Z., Huang L., RA Ma X., Sun W., Chen J., Ma Y., M'hamdi O., Govindarajan G., Cabrera P.E., RA Li J., Gupta N., Naeem M.A., Khan S.N., Riazuddin S., Akram J., RA Ayyagari R., Sieving P.A., Riazuddin S.A., Hejtmancik J.F.; RT "Homozygosity Mapping and Genetic Analysis of Autosomal Recessive Retinal RT Dystrophies in 144 Consanguineous Pakistani Families."; RL Invest. Ophthalmol. Vis. Sci. 58:2218-2238(2017). CC -!- FUNCTION: Involved in intraflagellar protein (IFT) transport in CC photoreceptor cilia. {ECO:0000250|UniProtKB:Q80ST9}. CC -!- SUBUNIT: Interacts with NINL (PubMed:18826961). Interacts with OFD1 CC (PubMed:19800048). Interacts with FAM161A (PubMed:22940612). Interacts CC with components of the IFT complex B (PubMed:21606596). CC {ECO:0000269|PubMed:18826961, ECO:0000269|PubMed:19800048, CC ECO:0000269|PubMed:21606596, ECO:0000269|PubMed:22940612}. CC -!- INTERACTION: CC Q86VQ0; Q96CN9: GCC1; NbExp=3; IntAct=EBI-6658186, EBI-746252; CC Q86VQ0; Q9P2K3: RCOR3; NbExp=3; IntAct=EBI-6658186, EBI-743428; CC Q86VQ0; Q9P2K3-2: RCOR3; NbExp=3; IntAct=EBI-6658186, EBI-1504830; CC Q86VQ0; O43805: SSNA1; NbExp=3; IntAct=EBI-6658186, EBI-2515299; CC Q86VQ0; Q9UMX1: SUFU; NbExp=3; IntAct=EBI-6658186, EBI-740595; CC Q86VQ0; Q9UBB9: TFIP11; NbExp=4; IntAct=EBI-6658186, EBI-1105213; CC Q86VQ0; P40222: TXLNA; NbExp=3; IntAct=EBI-6658186, EBI-359793; CC -!- SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton CC {ECO:0000269|PubMed:17546029}. Cytoplasm, cytoskeleton, cilium axoneme CC {ECO:0000269|PubMed:17546029}. Cytoplasm, cytoskeleton, cilium basal CC body {ECO:0000269|PubMed:17546029}. Cytoplasm, cytoskeleton, CC microtubule organizing center, centrosome CC {ECO:0000269|PubMed:17546029}. Cell projection, cilium CC {ECO:0000269|PubMed:21606596}. Note=In non- ciliated cells, localizes CC to the centrosome and its associated microtubule array CC (PubMed:17546029). Colocalizes with IFT complex A and B proteins in the CC connecting cilium in primary cilia of hTERT-RPE1 cells CC (PubMed:21606596). {ECO:0000269|PubMed:17546029, CC ECO:0000269|PubMed:21606596}. CC -!- TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:17546029}. CC -!- DISEASE: Leber congenital amaurosis 5 (LCA5) [MIM:604537]: A severe CC dystrophy of the retina, typically becoming evident in the first years CC of life. Visual function is usually poor and often accompanied by CC nystagmus, sluggish or near-absent pupillary responses, photophobia, CC high hyperopia and keratoconus. {ECO:0000269|PubMed:17546029, CC ECO:0000269|PubMed:18000884, ECO:0000269|PubMed:18334959, CC ECO:0000269|PubMed:28418496}. Note=The disease is caused by variants CC affecting the gene represented in this entry. CC -!- SIMILARITY: Belongs to the LCA5 family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AL391840; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CH471051; EAW48705.1; -; Genomic_DNA. DR EMBL; CH471051; EAW48706.1; -; Genomic_DNA. DR EMBL; BC050327; AAH50327.1; -; mRNA. DR CCDS; CCDS4990.1; -. DR RefSeq; NP_001116241.1; NM_001122769.2. DR RefSeq; NP_859065.2; NM_181714.3. DR RefSeq; XP_005248722.1; XM_005248665.4. DR RefSeq; XP_011533806.1; XM_011535504.1. DR AlphaFoldDB; Q86VQ0; -. DR SMR; Q86VQ0; -. DR BioGRID; 127950; 126. DR IntAct; Q86VQ0; 120. DR MINT; Q86VQ0; -. DR STRING; 9606.ENSP00000376686; -. DR iPTMnet; Q86VQ0; -. DR PhosphoSitePlus; Q86VQ0; -. DR BioMuta; LCA5; -. DR DMDM; 71658798; -. DR EPD; Q86VQ0; -. DR jPOST; Q86VQ0; -. DR MassIVE; Q86VQ0; -. DR MaxQB; Q86VQ0; -. DR PaxDb; 9606-ENSP00000376686; -. DR PeptideAtlas; Q86VQ0; -. DR ProteomicsDB; 70054; -. DR Pumba; Q86VQ0; -. DR Antibodypedia; 31597; 157 antibodies from 24 providers. DR DNASU; 167691; -. DR Ensembl; ENST00000369846.9; ENSP00000358861.4; ENSG00000135338.14. DR Ensembl; ENST00000392959.5; ENSP00000376686.1; ENSG00000135338.14. DR GeneID; 167691; -. DR KEGG; hsa:167691; -. DR MANE-Select; ENST00000369846.9; ENSP00000358861.4; NM_001122769.3; NP_001116241.1. DR UCSC; uc003pix.4; human. DR AGR; HGNC:31923; -. DR CTD; 167691; -. DR DisGeNET; 167691; -. DR GeneCards; LCA5; -. DR HGNC; HGNC:31923; LCA5. DR HPA; ENSG00000135338; Low tissue specificity. DR MalaCards; LCA5; -. DR MIM; 604537; phenotype. DR MIM; 611408; gene. DR neXtProt; NX_Q86VQ0; -. DR OpenTargets; ENSG00000135338; -. DR Orphanet; 65; Leber congenital amaurosis. DR Orphanet; 364055; Severe early-childhood-onset retinal dystrophy. DR PharmGKB; PA142671563; -. DR VEuPathDB; HostDB:ENSG00000135338; -. DR eggNOG; ENOG502QQG3; Eukaryota. DR GeneTree; ENSGT00560000077266; -. DR HOGENOM; CLU_017042_0_0_1; -. DR InParanoid; Q86VQ0; -. DR OMA; SGKSNPF; -. DR OrthoDB; 2971757at2759; -. DR PhylomeDB; Q86VQ0; -. DR TreeFam; TF323306; -. DR PathwayCommons; Q86VQ0; -. DR SignaLink; Q86VQ0; -. DR BioGRID-ORCS; 167691; 7 hits in 1149 CRISPR screens. DR GeneWiki; LCA5; -. DR GenomeRNAi; 167691; -. DR Pharos; Q86VQ0; Tbio. DR PRO; PR:Q86VQ0; -. DR Proteomes; UP000005640; Chromosome 6. DR RNAct; Q86VQ0; Protein. DR Bgee; ENSG00000135338; Expressed in mucosa of paranasal sinus and 149 other cell types or tissues. DR ExpressionAtlas; Q86VQ0; baseline and differential. DR GO; GO:0005930; C:axoneme; IBA:GO_Central. DR GO; GO:0005813; C:centrosome; IEA:UniProtKB-SubCell. DR GO; GO:0036064; C:ciliary basal body; ISS:UniProtKB. DR GO; GO:0005929; C:cilium; IDA:MGI. DR GO; GO:0032391; C:photoreceptor connecting cilium; IDA:UniProtKB. DR GO; GO:0044877; F:protein-containing complex binding; IDA:MGI. DR GO; GO:0042073; P:intraciliary transport; IBA:GO_Central. DR GO; GO:0045494; P:photoreceptor cell maintenance; ISS:UniProtKB. DR GO; GO:0015031; P:protein transport; IEA:UniProtKB-KW. DR InterPro; IPR026188; Lebercilin-like. DR InterPro; IPR028933; Lebercilin_dom. DR PANTHER; PTHR16650; C21ORF13-RELATED; 1. DR PANTHER; PTHR16650:SF10; LEBERCILIN; 1. DR Pfam; PF15619; Lebercilin; 1. DR Genevisible; Q86VQ0; HS. PE 1: Evidence at protein level; KW Cell projection; Cilium; Coiled coil; Cytoplasm; Cytoskeleton; KW Disease variant; Leber congenital amaurosis; Phosphoprotein; KW Protein transport; Reference proteome; Transport. FT CHAIN 1..697 FT /note="Lebercilin" FT /id="PRO_0000089546" FT REGION 1..90 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 412..432 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 522..548 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 606..697 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COILED 103..297 FT /evidence="ECO:0000255" FT COILED 389..485 FT /evidence="ECO:0000255" FT COMPBIAS 8..22 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 25..49 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 524..548 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 608..632 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 645..659 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 666..697 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOD_RES 7 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q80ST9" FT MOD_RES 45 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:23186163" FT VARIANT 24 FT /note="L -> S (in dbSNP:rs2655655)" FT /evidence="ECO:0000269|PubMed:15489334, ECO:0000269|Ref.2" FT /id="VAR_023094" FT VARIANT 26 FT /note="D -> A (in dbSNP:rs34068461)" FT /id="VAR_038989" FT VARIANT 66 FT /note="R -> Q (in dbSNP:rs35338066)" FT /id="VAR_038990" FT VARIANT 218 FT /note="R -> G (in LCA5; uncertain significance)" FT /evidence="ECO:0000269|PubMed:28418496" FT /id="VAR_081583" FT VARIANT 546 FT /note="A -> P (in dbSNP:rs35415141)" FT /id="VAR_038991" FT VARIANT 656 FT /note="G -> D (in dbSNP:rs1875845)" FT /id="VAR_038992" FT CONFLICT 15 FT /note="K -> E (in Ref. 3; AAH50327)" FT /evidence="ECO:0000305" FT CONFLICT 502 FT /note="P -> R (in Ref. 3; AAH50327)" FT /evidence="ECO:0000305" FT CONFLICT 623 FT /note="D -> G (in Ref. 3; AAH50327)" FT /evidence="ECO:0000305" SQ SEQUENCE 697 AA; 80554 MW; A8F8AB1A565EB633 CRC64; MGERAGSPGT DQERKAGKHH YSYLSDFETP QSSGRSSLVS SSPASVRRKN PKRQTSDGQV HHQAPRKPSP KGLPNRKGVR VGFRSQSLNR EPLRKDTDLV TKRILSARLL KINELQNEVS ELQVKLAELL KENKSLKRLQ YRQEKALNKF EDAENEISQL IFRHNNEITA LKERLRKSQE KERATEKRVK DTESELFRTK FSLQKLKEIS EARHLPERDD LAKKLVSAEL KLDDTERRIK ELSKNLELST NSFQRQLLAE RKRAYEAHDE NKVLQKEVQR LYHKLKEKER ELDIKNIYSN RLPKSSPNKE KELALRKNAA CQSDFADLCT KGVQTMEDFK PEEYPLTPET IMCYENKWEE PGHLTLDLQS QKQDRHGEAG ILNPIMEREE KFVTDEELHV VKQEVEKLED EWEREELDKK QKEKASLLER EEKPEWETGR YQLGMYPIQN MDKLQGEEEE RLKREMLLAK LNEIDRELQD SRNLKYPVLP LLPDFESKLH SPERSPKTYR FSESSERLFN GHHLQDISFS TPKGEGQNSG NVRSPASPNE FAFGSYVPSF AKTSERSNPF SQKSSFLDFQ RNSMEKLSKD GVDLITRKEK KANLMEQLFG ASGSSTISSK SSDPNSVASS KGDIDPLNFL PGNKGSRDQE HDEDEGFFLS EGRSFNPNRH RLKHADDKPA VKAADSVEDE IEEVALR //