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Protein
Submitted name:

TCFL5 protein

Gene
N/A
Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
TCFL5 proteinImported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA36398.

PTM / Processingi

Proteomic databases

PaxDbiQ86TP4.
PRIDEiQ86TP4.

Expressioni

Gene expression databases

GenevisibleiQ86TP4. HS.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000334294.

Structurei

3D structure databases

ProteinModelPortaliQ86TP4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini352 – 40251BHLH (basic helix-loop-helix)InterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 basic helix-loop-helix (bHLH) domain.UniRule annotation

Phylogenomic databases

eggNOGiENOG410IECS. Eukaryota.
ENOG410YEAA. LUCA.
HOGENOMiHOG000231268.
HOVERGENiHBG067309.
KOiK09092.

Family and domain databases

Gene3Di4.10.280.10. 1 hit.
InterProiIPR011598. bHLH_dom.
[Graphical view]
PfamiPF00010. HLH. 1 hit.
[Graphical view]
SMARTiSM00353. HLH. 1 hit.
[Graphical view]
SUPFAMiSSF47459. SSF47459. 1 hit.
PROSITEiPS50888. BHLH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q86TP4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTEVEYTQLQ HILCSHMEAA ADGELETRLN SALLAAAGPG AGAGGFAAGG
60 70 80 90 100
QGGAAPVYPV LCPSALAADA PCLGHIDFQE LRMMLLSEAG AAEKTSGGGD
110 120 130 140 150
GARARADGAA KEGAGAAAAA AGPDGAPEAR AKPAVRVRLE DRFNSIPAEP
160 170 180 190 200
PPAPRGPEPP EPGGALNNLV TLIRHPSELM NVPLQQQNKC TALVKNKTAA
210 220 230 240 250
TTTALQFTYP LFTTNACSTS GNSDLSQTQS SSNSCSVLEA AKHQDIGLPR
260 270 280 290 300
AFSFCYQQEI ESTKQTLGSR NKVLPEQVWI KVGEAALCKQ ALKRNRSRMR
310 320 330 340 350
QLDTNVERRA LGEIQNVGEG ATATQGAWQS SESSQANLGE QAQSGPQGGR
360 370 380 390 400
SQRRERHNRM ERDRRRRIRI CCDELNLLVP FCNAETDKAT TLQWTTAFLK
410 420 430 440 450
YIQERHGDSL KKVLSTNSRY VMLWTCFLKM KSAVDGKNPQ HAYRTANHKW
460 470 480
LCLHEARSFA FEVSIWAHFQ LFRVRIPEGF LSI
Length:483
Mass (Da):52,265
Last modified:June 1, 2003 - v1
Checksum:i9DB370986A5157DE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC046933 mRNA. Translation: AAH46933.1.
RefSeqiNP_001288655.1. NM_001301726.1.
NP_006593.2. NM_006602.3.
UniGeneiHs.126248.

Genome annotation databases

GeneIDi10732.
KEGGihsa:10732.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC046933 mRNA. Translation: AAH46933.1.
RefSeqiNP_001288655.1. NM_001301726.1.
NP_006593.2. NM_006602.3.
UniGeneiHs.126248.

3D structure databases

ProteinModelPortaliQ86TP4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000334294.

Proteomic databases

PaxDbiQ86TP4.
PRIDEiQ86TP4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi10732.
KEGGihsa:10732.

Organism-specific databases

CTDi10732.
PharmGKBiPA36398.

Phylogenomic databases

eggNOGiENOG410IECS. Eukaryota.
ENOG410YEAA. LUCA.
HOGENOMiHOG000231268.
HOVERGENiHBG067309.
KOiK09092.

Miscellaneous databases

GenomeRNAii10732.
NextBioi40740.

Gene expression databases

GenevisibleiQ86TP4. HS.

Family and domain databases

Gene3Di4.10.280.10. 1 hit.
InterProiIPR011598. bHLH_dom.
[Graphical view]
PfamiPF00010. HLH. 1 hit.
[Graphical view]
SMARTiSM00353. HLH. 1 hit.
[Graphical view]
SUPFAMiSSF47459. SSF47459. 1 hit.
PROSITEiPS50888. BHLH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: SkinImported.

Entry informationi

Entry nameiQ86TP4_HUMAN
AccessioniPrimary (citable) accession number: Q86TP4
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: December 9, 2015
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.