##gff-version 3 Q86887 UniProtKB Initiator methionine 1 1 . . . Note=Removed%3B by host;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q86887 UniProtKB Chain 2 2183 . . . ID=PRO_0000426296;Note=Genome polyprotein Q86887 UniProtKB Chain 2 849 . . . ID=PRO_0000426297;Note=P1 Q86887 UniProtKB Chain 2 330 . . . ID=PRO_0000426298;Note=Capsid protein VP0 Q86887 UniProtKB Chain 2 69 . . . ID=PRO_0000426299;Note=Capsid protein VP4 Q86887 UniProtKB Chain 70 330 . . . ID=PRO_0000426300;Note=Capsid protein VP2 Q86887 UniProtKB Chain 331 568 . . . ID=PRO_0000426301;Note=Capsid protein VP3 Q86887 UniProtKB Chain 569 849 . . . ID=PRO_0000426302;Note=Capsid protein VP1 Q86887 UniProtKB Chain 850 1427 . . . ID=PRO_0000426303;Note=P2 Q86887 UniProtKB Chain 850 999 . . . ID=PRO_0000426304;Note=Protease 2A Q86887 UniProtKB Chain 1000 1098 . . . ID=PRO_0000039609;Note=Protein 2B Q86887 UniProtKB Chain 1099 1427 . . . ID=PRO_0000039610;Note=Protein 2C Q86887 UniProtKB Chain 1428 2183 . . . ID=PRO_0000426305;Note=P3 Q86887 UniProtKB Chain 1428 1538 . . . ID=PRO_0000426306;Note=Protein 3AB Q86887 UniProtKB Chain 1428 1516 . . . ID=PRO_0000039611;Note=Protein 3A Q86887 UniProtKB Chain 1517 1538 . . . ID=PRO_0000426307;Note=Viral protein genome-linked Q86887 UniProtKB Chain 1539 2183 . . . ID=PRO_0000426308;Note=Protein 3CD Q86887 UniProtKB Chain 1539 1721 . . . ID=PRO_0000426309;Note=Protease 3C Q86887 UniProtKB Chain 1722 2183 . . . ID=PRO_0000426310;Note=RNA-directed RNA polymerase Q86887 UniProtKB Topological domain 2 1493 . . . Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 Q86887 UniProtKB Intramembrane 1494 1509 . . . Ontology_term=ECO:0000255;evidence=ECO:0000255 Q86887 UniProtKB Topological domain 1510 2183 . . . Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 Q86887 UniProtKB Domain 1203 1359 . . . Note=SF3 helicase;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00551 Q86887 UniProtKB Domain 1539 1717 . . . Note=Peptidase C3;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01222 Q86887 UniProtKB Domain 1948 2064 . . . Note=RdRp catalytic;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU00539 Q86887 UniProtKB Zinc finger 1367 1384 . . . Note=C4-type%3B degenerate;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:B9VUU3 Q86887 UniProtKB Region 566 582 . . . Note=Amphipathic alpha-helix;Ontology_term=ECO:0000255;evidence=ECO:0000255 Q86887 UniProtKB Region 1099 1237 . . . Note=Oligomerization;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q86887 UniProtKB Region 1099 1171 . . . Note=Membrane-binding;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q86887 UniProtKB Region 1120 1124 . . . Note=RNA-binding;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q86887 UniProtKB Region 1411 1418 . . . Note=RNA-binding;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q86887 UniProtKB Region 1422 1427 . . . Note=Oligomerization;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q86887 UniProtKB Active site 870 870 . . . Note=For protease 2A activity;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q86887 UniProtKB Active site 888 888 . . . Note=For protease 2A activity;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q86887 UniProtKB Active site 959 959 . . . Note=For protease 2A activity;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q86887 UniProtKB Active site 1578 1578 . . . Note=For protease 3C activity;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01222 Q86887 UniProtKB Active site 1609 1609 . . . Note=For protease 3C activity;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01222 Q86887 UniProtKB Active site 1685 1685 . . . Note=For protease 3C activity;Ontology_term=ECO:0000255;evidence=ECO:0000255|PROSITE-ProRule:PRU01222 Q86887 UniProtKB Binding site 905 905 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9QF31 Q86887 UniProtKB Binding site 907 907 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9QF31 Q86887 UniProtKB Binding site 965 965 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9QF31 Q86887 UniProtKB Binding site 967 967 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q9QF31 Q86887 UniProtKB Binding site 1367 1367 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:B9VUU3 Q86887 UniProtKB Binding site 1379 1379 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:B9VUU3 Q86887 UniProtKB Binding site 1384 1384 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:B9VUU3 Q86887 UniProtKB Binding site 1954 1954 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q86887 UniProtKB Binding site 1954 1954 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q86887 UniProtKB Binding site 2050 2050 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q86887 UniProtKB Binding site 2050 2050 . . . Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q86887 UniProtKB Site 69 70 . . . Note=Cleavage%3B by autolysis;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q86887 UniProtKB Site 330 331 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q86887 UniProtKB Site 849 850 . . . Note=Cleavage%3B by autolysis;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q86887 UniProtKB Site 999 1000 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q86887 UniProtKB Site 1098 1099 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q86887 UniProtKB Site 1123 1123 . . . Note=Involved in the interaction with host RTN3;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:Q66478 Q86887 UniProtKB Site 1427 1428 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q86887 UniProtKB Site 1516 1517 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q86887 UniProtKB Site 1538 1539 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q86887 UniProtKB Site 1721 1722 . . . Note=Cleavage%3B by protease 3C;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03301 Q86887 UniProtKB Modified residue 1519 1519 . . . Note=O-(5'-phospho-RNA)-tyrosine;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300 Q86887 UniProtKB Lipidation 2 2 . . . Note=N-myristoyl glycine%3B by host;Ontology_term=ECO:0000250;evidence=ECO:0000250|UniProtKB:P03300