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Protein

Gag polyprotein

Gene
N/A
Organism
Avian myeloblastosis virus
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHydrolaseSAAS annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Gag polyproteinSAAS annotation
OrganismiAvian myeloblastosis virusImported
Taxonomic identifieri11866 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeAlpharetrovirus
Virus hostiGalliformes [TaxID: 8976]

Subcellular locationi

  • Virion SAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

VirionSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliQ86830
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini509 – 524CCHC-typeInterPro annotationAdd BLAST16
Domaini609 – 690Peptidase A2InterPro annotationAdd BLAST82

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Family and domain databases

CDDicd05482 HIV_retropepsin_like, 1 hit
Gene3Di1.10.1200.30, 1 hit
1.10.150.90, 1 hit
1.10.375.10, 1 hit
2.40.70.10, 1 hit
InterProiView protein in InterPro
IPR001969 Aspartic_peptidase_AS
IPR004028 Gag_M
IPR000721 Gag_p24
IPR012344 Matrix_HIV/RSV_N
IPR001995 Peptidase_A2_cat
IPR021109 Peptidase_aspartic_dom_sf
IPR034170 Retropepsin-like_cat_dom
IPR018061 Retropepsins
IPR008916 Retrov_capsid_C
IPR008919 Retrov_capsid_N
IPR010999 Retrovr_matrix
IPR001878 Znf_CCHC
IPR036875 Znf_CCHC_sf
PfamiView protein in Pfam
PF00607 Gag_p24, 1 hit
PF02813 Retro_M, 1 hit
PF00077 RVP, 1 hit
PF00098 zf-CCHC, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD002871 Gag_M, 1 hit
SMARTiView protein in SMART
SM00343 ZnF_C2HC, 2 hits
SUPFAMiSSF47836 SSF47836, 1 hit
SSF47943 SSF47943, 1 hit
SSF50630 SSF50630, 1 hit
SSF57756 SSF57756, 1 hit
PROSITEiView protein in PROSITE
PS50175 ASP_PROT_RETROV, 1 hit
PS00141 ASP_PROTEASE, 1 hit
PS50158 ZF_CCHC, 1 hit

Sequencei

Sequence statusi: Complete.

Q86830-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEAVIKVISS ACKTYCGKTS PSKKEIGAML SLLQKEGLLM SPSDLYSPGS
60 70 80 90 100
WDPITAALSQ RAMVLGKSGE LKTWGLVLGA LKAAREEQVT SEQAKFWLGL
110 120 130 140 150
GGGRVSPPGP ECIEKPATER RTDKGEEVGE TTAQRDAKMA PEETATPKTV
160 170 180 190 200
GTSCYHCGTA IGCSCATASA PPPPYVGSGL YPSLAGVGEQ QGQEGDTPGG
210 220 230 240 250
AEQPRGEPRH AGLAPKAALT DWARVREELA STGPPVVAMP VVIKTEGPAW
260 270 280 290 300
TPLEPKWITR LADTVRTKGL RSPITMAEVE ALMSSPLLPH DVTNLMRVIL
310 320 330 340 350
GPAPYALWMD AWGVQLQTVI AAATRDPRHP ANGQGRGERT NLNRLKGLAD
360 370 380 390 400
GMVGNPQGQA ALLRPGELVA ITAAALQAFR EVARLAEPAG PWADITQGPS
410 420 430 440 450
EPFVDFANRL IKAVEGSDLP PSARAPVIID CFRQKSQPDI QQLIRAAPST
460 470 480 490 500
LTTPGEIIKY VLDRQKTAPL TDQGIAAAMS SAIQPLVMAV VNRERDGQTG
510 520 530 540 550
SGGRARGLCY TCGSPGHYQA QCPKKRKSGN SRERCQLCDG MGHNAKQCRK
560 570 580 590 600
RDGNQGQRPG RGLSSGPWPV SEPPAVSLAM TMEHKDRPLV RVILTNTGSH
610 620 630 640 650
PVKQRSVYIT ALLDSGADIT IISEEDWPAD WPVMEAANPQ IHGIGGGIPM
660 670 680 690 700
RKSRDMIEVG VINRDGSLER PLLLFPAVAM VRGSILGRDC LQGLGLRLTN

L
Length:701
Mass (Da):74,613
Last modified:November 1, 1996 - v1
Checksum:i3CBEDB20C24BA7FB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
S74099 Genomic RNA Translation: AAB31928.1
PIRiA40485
S02806

Keywords - Coding sequence diversityi

Ribosomal frameshiftingSAAS annotation

Similar proteinsi

Entry informationi

Entry nameiQ86830_AVIMB
AccessioniPrimary (citable) accession number: Q86830
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: March 28, 2018
This is version 114 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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