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Q86567

- MREP_BBTVA

UniProt

Q86567 - MREP_BBTVA

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Protein

Master replication protein

Gene

DNA-R

Organism
Banana bunchy top virus (isolate Autralia) (BBTV)
Status
Reviewed - Annotation score: 4 out of 5- Protein inferred from homologyi

Functioni

Essential for the replication of all genomic viral ssDNA (trans-replication). The closed circular ssDNA genome is first converted to a superhelical dsDNA. Rep binds a specific hairpin at the genome origin of replication. Introduces an endonucleolytic nick within the conserved sequence 5'-A[GT]TATTAC-3' in the intergenic region of the genome, thereby initiating the rolling circle replication (RCR). Following cleavage, binds covalently to the 5'-phosphate of DNA as a tyrosyl ester. The cleavage gives rise to a free 3'-OH that serves as a primer for the cellular DNA polymerase. The polymerase synthesizes the (+) strand DNA by rolling circle mechanism. After one round of replication, a Rep-catalyzed nucleotidyl transfer reaction releases a circular single-stranded virus genome, thereby terminating the replication. Displays origin-specific DNA cleavage, nucleotidyl transferase, ATPase and helicase activities (By similarity).By similarity

Catalytic activityi

ATP + H2O = ADP + phosphate.

Cofactori

Divalent metal cations, possibly magnesium or manganese.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi33 – 331Divalent metal cationSequence Analysis
Metal bindingi41 – 411Divalent metal cationSequence Analysis
Active sitei79 – 791For DNA cleavage activityBy similarity
Metal bindingi84 – 841Divalent metal cationSequence Analysis

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi180 – 1889ATPBy similarity

GO - Molecular functioni

  1. ATPase activity, uncoupled Source: InterPro
  2. ATP binding Source: UniProtKB-KW
  3. DNA binding Source: UniProtKB-KW
  4. endodeoxyribonuclease activity, producing 5'-phosphomonoesters Source: InterPro
  5. metal ion binding Source: UniProtKB-KW
  6. nucleotidyltransferase activity Source: UniProtKB-KW
  7. RNA binding Source: InterPro
  8. RNA helicase activity Source: InterPro

GO - Biological processi

  1. DNA replication Source: UniProtKB-KW
  2. protein-DNA covalent cross-linking Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Endonuclease, Helicase, Hydrolase, Nuclease, Nucleotidyltransferase, Transferase

Keywords - Biological processi

DNA replication

Keywords - Ligandi

ATP-binding, DNA-binding, Metal-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Master replication protein (EC:2.7.7.-, EC:3.1.21.-, EC:3.6.1.3)
Short name:
M-Rep
Gene namesi
Name:DNA-R
Synonyms:C1
OrganismiBanana bunchy top virus (isolate Autralia) (BBTV)
Taxonomic identifieri645099 [NCBI]
Taxonomic lineageiVirusesssDNA virusesNanoviridaeBabuvirus
Virus hostiMusa [TaxID: 4640]
ProteomesiUP000002339: Genome

Subcellular locationi

Host nucleus Curated

GO - Cellular componenti

  1. host cell nucleus Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Host nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 286286Master replication proteinPRO_0000379898Add
BLAST

Keywords - PTMi

Covalent protein-DNA linkage

Interactioni

Subunit structurei

Homooligomer (Potential). Rep binds to repeated DNA motifs (iterons) (By similarity).By similarityCurated

Structurei

3D structure databases

ProteinModelPortaliQ86567.
SMRiQ86567. Positions 2-95.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi10 – 134RCR-1By similarity
Motifi41 – 466RCR-2By similarity
Motifi50 – 7021Nuclear localization signalSequence AnalysisAdd
BLAST
Motifi79 – 824RCR-3By similarity
Motifi96 – 1027Nuclear localization signalSequence Analysis

Domaini

There are 3 rolling circle replication (RCR) motifs. RCR-2 is probably involved in metal coordination. RCR-3 is required for phosphodiester bond cleavage for initiation of RCR (By similarity).By similarity

Sequence similaritiesi

Family and domain databases

InterProiIPR000605. Helicase_SF3_ssDNA/RNA_vir.
IPR003365. Viral_rep_N.
[Graphical view]
PfamiPF00910. RNA_helicase. 1 hit.
PF02407. Viral_Rep. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q86567-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MARYVVCWMF TINNPTTLPV MRDEIKYMVY QVERGQEGTR HVQGYVEMKR
60 70 80 90 100
RSSLKQMRGF FPGAHLEKRK GSQEEARSYC MKEDTRIEGP FEFGSFKLSC
110 120 130 140 150
NDNLFDVIQD MRETHKRPLE YLYDCPNTFD RSKDTLYRVQ AEMNKTKAMN
160 170 180 190 200
SWRTSFSAWT SEVENIMAQP CHRRIIWVYG PNGGEGKTTY AKHLMKTRNA
210 220 230 240 250
FYSPGGKSLD ICRLYNYEDI VIFDIPRCKE DYLNYGLLEE FKNGIIQSGK
260 270 280
YEPVLKIVEY VEVIVMANFL PKEGIFSEDR IKLVSC
Length:286
Mass (Da):33,604
Last modified:November 1, 1996 - v1
Checksum:i2508FC37F1AEB013
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
S56276 Genomic DNA. Translation: AAB25544.1.
PIRiJQ1960.
RefSeqiNP_604483.1. NC_003479.1.

Genome annotation databases

GeneIDi963871.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
S56276 Genomic DNA. Translation: AAB25544.1 .
PIRi JQ1960.
RefSeqi NP_604483.1. NC_003479.1.

3D structure databases

ProteinModelPortali Q86567.
SMRi Q86567. Positions 2-95.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 963871.

Family and domain databases

InterProi IPR000605. Helicase_SF3_ssDNA/RNA_vir.
IPR003365. Viral_rep_N.
[Graphical view ]
Pfami PF00910. RNA_helicase. 1 hit.
PF02407. Viral_Rep. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Nucleotide sequence of one component of the banana bunchy top virus genome contains a putative replicase gene."
    Harding R.M., Burns T.M., Hafner G.J., Dietzgen R.G., Dale J.L.
    J. Gen. Virol. 74:323-328(1993) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Entry informationi

Entry nameiMREP_BBTVA
AccessioniPrimary (citable) accession number: Q86567
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 28, 2009
Last sequence update: November 1, 1996
Last modified: October 29, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Multifunctional enzyme, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3