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Protein

Capsid protein

Gene
N/A
Organism
Raspberry bushy dwarf virus (isolate Malling Jewel raspberry/R15) (RBDV)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Capsid protein self-assembles to form a capsid about 33 nm in diameter. The capsid encapsulates two genomic RNAs as well as a third, subgenomic RNA (RNA3) (Potential).Curated

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein
Short name:
CP
Alternative name(s):
Coat protein
OrganismiRaspberry bushy dwarf virus (isolate Malling Jewel raspberry/R15) (RBDV)
Taxonomic identifieri652675 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageIdaeovirus
Virus hostiRubus idaeus (Raspberry) [TaxID: 32247]
Rubus occidentalis (Black raspberry) [TaxID: 75079]
Rubus ursinus (California blackberry) [TaxID: 75100]
Proteomesi
  • UP000001102 Componenti: Genome

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00004024721 – 274Capsid proteinAdd BLAST274

Structurei

3D structure databases

SMRiQ86564.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Family and domain databases

InterProiView protein in InterPro
IPR009516. RBDV_coat.
PfamiView protein in Pfam
PF06593. RBDV_coat. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD039763. RBDV_coat. 1 hit.

Sequencei

Sequence statusi: Complete.

Q86564-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKKAVPPIV KAQYELYNRK LNRAIKVSGS QKKLDASFVG FSESSNPETG
60 70 80 90 100
KPHADMSMSA KVKRVNTWLK NFDREYWDNQ FASKPIPRPA KQVLKGSSSK
110 120 130 140 150
SQQRDEGEVV FTRKDSQKSV RTVSYWVCTP EKSMKPLKYK EDENVVEVTF
160 170 180 190 200
NDLAAQKAGD KLVSILLEIN VVGGAVDDKG RVAVLEKDAA VTVDYLLGSP
210 220 230 240 250
YEAINLVSGL NKINFRSMTD VVDSIPSLLN ERKVCVFQND DSSSFYIRKW
260 270
ANFLQEVSAV LPVGTGKSST IVLT
Length:274
Mass (Da):30,495
Last modified:November 1, 1996 - v1
Checksum:iA05BDE8BDDD85B66
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
S55890 Genomic RNA. Translation: AAB19768.1.
PIRiJQ1293.
RefSeqiNP_620467.1. NC_003740.1.

Genome annotation databases

GeneIDi963859.
KEGGivg:963859.

Similar proteinsi

Entry informationi

Entry nameiCAPSD_RBDVR
AccessioniPrimary (citable) accession number: Q86564
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 30, 2010
Last sequence update: November 1, 1996
Last modified: February 15, 2017
This is version 34 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome