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Q86516 (NSP1A_ROTGI) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Non-structural protein 1, peptide 1

Short name=NSP1 peptide 1
Alternative name(s):
NSP1-1
OrganismRotavirus B (isolate Rat/United States/IDIR/1984) (RV-B) (Rotavirus B (isolate infectious diarrhea of infant rats))
Taxonomic identifier28877 [NCBI]
Taxonomic lineageVirusesdsRNA virusesReoviridaeSedoreovirinaeRotavirus
Virus hostHomo sapiens (Human) [TaxID: 9606]
Rattus norvegicus (Rat) [TaxID: 10116]

Protein attributes

Sequence length115 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Subcellular location

Host membrane; Single-pass membrane protein Potential.

Sequence similarities

Belongs to the rotavirus B NSP1-1 family.

Ontologies

Keywords
   Cellular componentHost membrane
Membrane
   DomainTransmembrane
Transmembrane helix
Gene Ontology (GO)
   Cellular_componenthost cell membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

integral component of membrane

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 115115Non-structural protein 1, peptide 1
PRO_0000369855

Regions

Transmembrane39 – 5921Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
Q86516 [UniParc].

Last modified November 1, 1996. Version 1.
Checksum: 55A9F19FFA26194D

FASTA11512,845
        10         20         30         40         50         60 
MGNRQSSAQL NSHLTQISSQ HSNLYISDSK TSTFQTQHII LVAGVGIIVA LFILLVCSCV 

        70         80         90        100        110 
LNCYLCNKFK RENGIQSISK RSLRQSRPSP NLYVQPVMQS NPFIKEARES ICSEV 

« Hide

References

[1]"Expression and sequence analysis of gene 7 of the IDIR agent (group B rotavirus): similarity with NS53 of group A rotavirus."
Eiden J.J.
Virology 199:212-218(1994) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC RNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U01164 Genomic RNA. Translation: AAA60454.1.
PIRA49810.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

ProtoNetSearch...

Entry information

Entry nameNSP1A_ROTGI
AccessionPrimary (citable) accession number: Q86516
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: November 1, 1996
Last modified: February 19, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families