Q85FX1 (ODPB_CYAME) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Pyruvate dehydrogenase E1 component subunit beta
EC=1.2.4.1

Gene names

Name:	pdhB
Synonyms:	odpB

Encoded on

Plastid; Chloroplast

Organism

Cyanidioschyzon merolae (Red alga)

Taxonomic identifier

45157 [NCBI]

Taxonomic lineage

Eukaryota › Rhodophyta › Bangiophyceae › Cyanidiales › Cyanidiaceae › Cyanidioschyzon

Protein attributes

Sequence length	326 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3) By similarity.
Catalytic activity	Pyruvate + [dihydrolipoyllysine-residue acetyltransferase] lipoyllysine = [dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine + CO2.
Cofactor	Thiamine pyrophosphate By similarity.
Subunit structure	Heterodimer of an alpha and a beta chain By similarity.
Subcellular location	Plastid › chloroplast.

Ontologies

Keywords
Biological process	Glycolysis
Cellular component	Chloroplast Plastid
Ligand	Pyruvate Thiamine pyrophosphate
Molecular function	Oxidoreductase
Gene Ontology (GO)
Biological process	glycolysis Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	chloroplast Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	pyruvate dehydrogenase (acetyl-transferring) activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 326	326	Pyruvate dehydrogenase E1 component subunit beta		PRO_0000280106
Sites
	Binding site	61	1	Thiamine pyrophosphate By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q85FX1 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: FA96561EDDF71DF3	FASTA	326	35,983
	10 20 30 40 50 60 MLHKLFMYEA LREAIDEEMA RDKRVFVLGE DVGHYGGSYK VTKQLHTKYG DLRVLDTPIA 70 80 90 100 110 120 ENSFTGMAIG AAMTGLKPVV EGMNLSFLLL AFNQISNNAG MLHYTSGGNW SIPLVIRGPG 130 140 150 160 170 180 GIGKQLSAEH SQRIEAYFQA VPGLKIVACS TPYNAKGLLK AAIRDNNPVL FLEHVLLYNL 190 200 210 220 230 240 KQEIPKQEYV LPLDKAQVVR EGSDVTIITY SRMLHHVMQA VKQLVAQGMN PEVIDLISLK 250 260 270 280 290 300 PIDLETLVTS VSKTHKAIIV EECMQTGGIA AEVMAQIYSH AFDELDAPIR RLSSKDVPTP 310 320 YNGYLEQACL VQPTQIVEAV KTLMST

References

[1]

"Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae." Ohta N., Matsuzaki M., Misumi O., Miyagishima S.-Y., Nozaki H., Tanaka K., Shin-i T., Kohara Y., Kuroiwa T. DNA Res. 10:67-77(2003) [PubMed: 12755171] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: 10D.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AB002583 Genomic DNA. Translation: BAC76222.1.
RefSeq	NP_849060.1. NC_004799.1.
3D structure databases
HSSP	HSSP built from PDB template 1W88 based on UniProtKB P21874.
ProteinModelPortal	Q85FX1.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	844910.
KEGG	cme:CMV154C.
Phylogenomic databases
HOGENOM	HBG753264.
PhylomeDB	Q85FX1.
ProtClustDB	CHL00144.
Family and domain databases
InterPro	IPR009014. Transketo_C/Pyr-ferredox_oxred. IPR015941. Transketolase-like_C. IPR005475. Transketolase-like_Pyr-bd. IPR005476. Transketolase_C. [Graphical view]
Gene3D	G3DSA:3.40.50.920. Transketo_C_like. 1 hit.
Pfam	PF02779. Transket_pyr. 1 hit. PF02780. Transketolase_C. 1 hit. [Graphical view]
SMART	SM00861. Transket_pyr. 1 hit. [Graphical view]
SUPFAM	SSF52922. Transketo_C_like. 1 hit.
ProtoNet	Search...

Entry information

Entry name

ODPB_CYAME

Accession

Primary (citable) accession number: Q85FX1

Entry history

Integrated into UniProtKB/Swiss-Prot:	March 6, 2007
Last sequence update:	June 1, 2003
Last modified:	December 14, 2011
This is version 47 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)