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Q85FL3

- ACCD_ADICA

UniProt

Q85FL3 - ACCD_ADICA

Protein

Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic

Gene

accD

Organism
Adiantum capillus-veneris (Maidenhair fern)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 56 (01 Oct 2014)
      Sequence version 2 (16 Aug 2004)
      Previous versions | rss
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    Functioni

    Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO2 group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA.UniRule annotation

    Catalytic activityi

    ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA.UniRule annotation

    Cofactori

    Binds 1 zinc ion per subunit.UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Metal bindingi51 – 511ZincUniRule annotation
    Metal bindingi54 – 541ZincUniRule annotation
    Metal bindingi70 – 701ZincUniRule annotation
    Metal bindingi73 – 731ZincUniRule annotation

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri51 – 7323C4-typeUniRule annotationAdd
    BLAST

    GO - Molecular functioni

    1. acetyl-CoA carboxylase activity Source: UniProtKB-HAMAP
    2. ATP binding Source: UniProtKB-KW
    3. zinc ion binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. fatty acid biosynthetic process Source: UniProtKB-HAMAP
    2. malonyl-CoA biosynthetic process Source: UniProtKB-UniPathway

    Keywords - Molecular functioni

    Ligase

    Keywords - Biological processi

    Fatty acid biosynthesis, Fatty acid metabolism, Lipid biosynthesis, Lipid metabolism

    Keywords - Ligandi

    ATP-binding, Metal-binding, Nucleotide-binding, Zinc

    Enzyme and pathway databases

    UniPathwayiUPA00655; UER00711.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplasticUniRule annotation (EC:6.4.1.2UniRule annotation)
    Short name:
    ACCase subunit betaUniRule annotation
    Short name:
    Acetyl-CoA carboxylase carboxyltransferase subunit betaUniRule annotation
    Gene namesi
    Name:accDUniRule annotation
    Encoded oniPlastid; Chloroplast
    OrganismiAdiantum capillus-veneris (Maidenhair fern)
    Taxonomic identifieri13818 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaMoniliformopsesPolypodiidaePolypodialesPteridaceaeAdiantum

    Subcellular locationi

    Plastidchloroplast stroma UniRule annotation

    GO - Cellular componenti

    1. acetyl-CoA carboxylase complex Source: InterPro
    2. chloroplast stroma Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Chloroplast, Plastid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 310310Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplasticPRO_0000199777Add
    BLAST

    Interactioni

    Subunit structurei

    Acetyl-CoA carboxylase is a heterohexamer composed of biotin carboxyl carrier protein, biotin carboxylase and 2 subunits each of ACCase subunit alpha and ACCase plastid-coded subunit beta (accD).By similarity

    Structurei

    3D structure databases

    ProteinModelPortaliQ85FL3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the AccD/PCCB family.UniRule annotation

    Zinc finger

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri51 – 7323C4-typeUniRule annotationAdd
    BLAST

    Keywords - Domaini

    Zinc-finger

    Family and domain databases

    Gene3Di3.90.226.10. 1 hit.
    HAMAPiMF_01395. AcetylCoA_CT_beta.
    InterProiIPR000438. Acetyl_CoA_COase_Trfase_b_su.
    IPR000022. Carboxyl_trans.
    IPR029045. ClpP/crotonase-like_dom.
    IPR011762. COA_CT_N.
    [Graphical view]
    PfamiPF01039. Carboxyl_trans. 1 hit.
    [Graphical view]
    PRINTSiPR01070. ACCCTRFRASEB.
    SUPFAMiSSF52096. SSF52096. 1 hit.
    TIGRFAMsiTIGR00515. accD. 1 hit.
    PROSITEiPS50980. COA_CT_NTER. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q85FL3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVMSVINWFE DRQKFGGLIG AFLEEATRSS MTNERDRRIS VNANKGLWAR    50
    CDNCGNMLYV KFLKQNRSVC EECGYHLSMS SMERIELLID PNTWIPLDED 100
    MSARDILSFS DEDSYETRIL LSQEKTGLTD AVQTGIGYLN GTLIALGVMD 150
    FHFMGGSMGS VVGEKITRLI EYATQRLLPL VLICASGGAR MQEGTLSLMQ 200
    MAKISSVLQL YQVQNKLLYI SVLTYPTTGG VTASFGMLGD IIIAEPKAYI 250
    AFAGKRVIEQ TLRQKIPDGF QAAESLFDNG LLDLIVPRNL LKGVLSEISG 300
    LYLSVPYNKN 310
    Length:310
    Mass (Da):34,417
    Last modified:August 16, 2004 - v2
    Checksum:i2C5B38A8CDCB054E
    GO

    RNA editingi

    The initiator methionine is created by RNA editing. The nonsense codon at position 260 is modified to a sense codon.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY178864 Genomic DNA. Translation: AAP29400.2.
    RefSeqiNP_848069.2. NC_004766.1.

    Genome annotation databases

    GeneIDi807410.

    Keywords - Coding sequence diversityi

    RNA editing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY178864 Genomic DNA. Translation: AAP29400.2 .
    RefSeqi NP_848069.2. NC_004766.1.

    3D structure databases

    ProteinModelPortali Q85FL3.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 807410.

    Enzyme and pathway databases

    UniPathwayi UPA00655 ; UER00711 .

    Family and domain databases

    Gene3Di 3.90.226.10. 1 hit.
    HAMAPi MF_01395. AcetylCoA_CT_beta.
    InterProi IPR000438. Acetyl_CoA_COase_Trfase_b_su.
    IPR000022. Carboxyl_trans.
    IPR029045. ClpP/crotonase-like_dom.
    IPR011762. COA_CT_N.
    [Graphical view ]
    Pfami PF01039. Carboxyl_trans. 1 hit.
    [Graphical view ]
    PRINTSi PR01070. ACCCTRFRASEB.
    SUPFAMi SSF52096. SSF52096. 1 hit.
    TIGRFAMsi TIGR00515. accD. 1 hit.
    PROSITEi PS50980. COA_CT_NTER. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete nucleotide sequence of the chloroplast genome from a leptosporangiate fern, Adiantum capillus-veneris L."
      Wolf P.G., Rowe C.A., Sinclair R.B., Hasebe M.
      DNA Res. 10:59-65(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    2. "High levels of RNA editing in a vascular plant chloroplast genome: analysis of transcripts from the fern Adiantum capillus-veneris."
      Wolf P.G., Rowe C.A., Hasebe M.
      Gene 339:89-97(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], RNA EDITING.
      Tissue: Frond.

    Entry informationi

    Entry nameiACCD_ADICA
    AccessioniPrimary (citable) accession number: Q85FL3
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 5, 2005
    Last sequence update: August 16, 2004
    Last modified: October 1, 2014
    This is version 56 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3