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Q85424 (NSP6_ROTRA) Reviewed, UniProtKB/Swiss-Prot

Last modified April 3, 2013. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Non-structural protein 6

Short name=NSP6
OrganismRotavirus A (strain Rabbit/United States/ALA/199? G3-P11[14]-Ix-Rx-Cx-Mx-A9-Nx-Tx-E5-H3) (RV-A) (Rotavirus A (strain Alabama))
Taxonomic identifier101359 [NCBI]
Taxonomic lineageVirusesdsRNA virusesReoviridaeSedoreovirinaeRotavirusRotavirus A
Virus hostOryctolagus cuniculus (Rabbit) [TaxID: 9986]

Protein attributes

Sequence length79 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Subunit structure

Interacts with NSP5 By similarity.

Subcellular location

Host cytoplasm. Note: Found in spherical cytoplasmic structures, called virus factories, that appear early after infection and are the site of viral replication and packaging By similarity.

Sequence similarities

Belongs to the rotavirus A NSP6 family.

Sequence caution

The sequence AAA66884.1 differs from that shown. Reason: Erroneous gene model prediction.

Ontologies

Keywords
   Cellular componentHost cytoplasm
Gene Ontology (GO)
   Cellular_componenthost cell cytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 7979Non-structural protein 6
PRO_0000369527

Sequences

Sequence LengthMass (Da)Tools
Q85424 [UniParc].

Last modified April 14, 2009. Version 2.
Checksum: E0DB6D75D51466F8

FASTA799,487
        10         20         30         40         50         60 
MNCMFHQMQK RSTNTCCQNL QKILDHLILL QTIHSPVFRL DRMQLRQMQT LACLWIHQHN 

        70 
HDHQVMLGAI KWISPLIKQ 

« Hide

References

[1]"Evidence of duplication and deletion in super short segment 11 of rabbit rotavirus Alabama strain."
Gorziglia M., Nishikawa K., Fukuhara N.
Virology 170:587-590(1989) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
J04361 Genomic DNA. Translation: AAA66884.1. Sequence problems.
PIRB30233.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

InterProIPR006950. Rotavirus_NSP6.
[Graphical view]
PfamPF04866. Rota_NS6. 1 hit.
[Graphical view]
ProDomPD008065. Rota_NS6. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetSearch...

Entry information

Entry nameNSP6_ROTRA
AccessionPrimary (citable) accession number: Q85424
Entry history
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: April 14, 2009
Last modified: April 3, 2013
This is version 34 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families