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Protein

Non-structural protein 6

Gene
N/A
Organism
Rotavirus A (strain Rabbit/United States/ALA/199? G3-P11[14]-Ix-Rx-Cx-Mx-A9-Nx-Tx-E5-H3) (RV-A) (Rotavirus A (strain Alabama))
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Non-structural protein 6
Short name:
NSP6
OrganismiRotavirus A (strain Rabbit/United States/ALA/199? G3-P11[14]-Ix-Rx-Cx-Mx-A9-Nx-Tx-E5-H3) (RV-A) (Rotavirus A (strain Alabama))
Taxonomic identifieri101359 [NCBI]
Taxonomic lineageiVirusesdsRNA virusesReoviridaeSedoreovirinaeRotavirusRotavirus A
Virus hostiOryctolagus cuniculus (Rabbit) [TaxID: 9986]

Subcellular locationi

Host cytoplasm
Note: Found in spherical cytoplasmic structures, called virus factories, that appear early after infection and are the site of viral replication and packaging.By similarity

GO - Cellular componenti

  1. host cell cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Host cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7979Non-structural protein 6PRO_0000369527Add
BLAST

Interactioni

Subunit structurei

Interacts with NSP5.By similarity

Family & Domainsi

Sequence similaritiesi

Belongs to the rotavirus A NSP6 family.Curated

Family and domain databases

InterProiIPR006950. Rotavirus_NSP6.
[Graphical view]
PfamiPF04866. Rota_NS6. 1 hit.
[Graphical view]
ProDomiPD008065. Rota_NS6. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

Q85424-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNCMFHQMQK RSTNTCCQNL QKILDHLILL QTIHSPVFRL DRMQLRQMQT
60 70
LACLWIHQHN HDHQVMLGAI KWISPLIKQ
Length:79
Mass (Da):9,487
Last modified:April 14, 2009 - v2
Checksum:iE0DB6D75D51466F8
GO

Sequence cautioni

The sequence AAA66884.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J04361 Genomic DNA. Translation: AAA66884.1. Sequence problems.
PIRiB30233.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
J04361 Genomic DNA. Translation: AAA66884.1. Sequence problems.
PIRiB30233.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiIPR006950. Rotavirus_NSP6.
[Graphical view]
PfamiPF04866. Rota_NS6. 1 hit.
[Graphical view]
ProDomiPD008065. Rota_NS6. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Publicationsi

  1. "Evidence of duplication and deletion in super short segment 11 of rabbit rotavirus Alabama strain."
    Gorziglia M., Nishikawa K., Fukuhara N.
    Virology 170:587-590(1989) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

Entry informationi

Entry nameiNSP6_ROTRA
AccessioniPrimary (citable) accession number: Q85424
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: April 14, 2009
Last modified: January 7, 2015
This is version 37 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.