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Q85424

- NSP6_ROTRA

UniProt

Q85424 - NSP6_ROTRA

Protein

Non-structural protein 6

Gene
N/A
Organism
Rotavirus A (strain Rabbit/United States/ALA/199? G3-P11[14]-Ix-Rx-Cx-Mx-A9-Nx-Tx-E5-H3) (RV-A) (Rotavirus A (strain Alabama))
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Names & Taxonomyi

    Protein namesi
    Recommended name:
    Non-structural protein 6
    Short name:
    NSP6
    OrganismiRotavirus A (strain Rabbit/United States/ALA/199? G3-P11[14]-Ix-Rx-Cx-Mx-A9-Nx-Tx-E5-H3) (RV-A) (Rotavirus A (strain Alabama))
    Taxonomic identifieri101359 [NCBI]
    Taxonomic lineageiVirusesdsRNA virusesReoviridaeSedoreovirinaeRotavirusRotavirus A
    Virus hostiOryctolagus cuniculus (Rabbit) [TaxID: 9986]

    Subcellular locationi

    Host cytoplasm
    Note: Found in spherical cytoplasmic structures, called virus factories, that appear early after infection and are the site of viral replication and packaging.By similarity

    GO - Cellular componenti

    1. host cell cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Host cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 7979Non-structural protein 6PRO_0000369527Add
    BLAST

    Interactioni

    Subunit structurei

    Interacts with NSP5.By similarity

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the rotavirus A NSP6 family.Curated

    Family and domain databases

    InterProiIPR006950. Rotavirus_NSP6.
    [Graphical view]
    PfamiPF04866. Rota_NS6. 1 hit.
    [Graphical view]
    ProDomiPD008065. Rota_NS6. 1 hit.
    [Graphical view] [Entries sharing at least one domain]

    Sequencei

    Sequence statusi: Complete.

    Q85424-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNCMFHQMQK RSTNTCCQNL QKILDHLILL QTIHSPVFRL DRMQLRQMQT   50
    LACLWIHQHN HDHQVMLGAI KWISPLIKQ 79
    Length:79
    Mass (Da):9,487
    Last modified:April 14, 2009 - v2
    Checksum:iE0DB6D75D51466F8
    GO

    Sequence cautioni

    The sequence AAA66884.1 differs from that shown. Reason: Erroneous gene model prediction.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    J04361 Genomic DNA. Translation: AAA66884.1. Sequence problems.
    PIRiB30233.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    J04361 Genomic DNA. Translation: AAA66884.1 . Sequence problems.
    PIRi B30233.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Family and domain databases

    InterProi IPR006950. Rotavirus_NSP6.
    [Graphical view ]
    Pfami PF04866. Rota_NS6. 1 hit.
    [Graphical view ]
    ProDomi PD008065. Rota_NS6. 1 hit.
    [Graphical view ] [Entries sharing at least one domain ]
    ProtoNeti Search...

    Publicationsi

    1. "Evidence of duplication and deletion in super short segment 11 of rabbit rotavirus Alabama strain."
      Gorziglia M., Nishikawa K., Fukuhara N.
      Virology 170:587-590(1989) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].

    Entry informationi

    Entry nameiNSP6_ROTRA
    AccessioniPrimary (citable) accession number: Q85424
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: April 14, 2009
    Last sequence update: April 14, 2009
    Last modified: October 1, 2014
    This is version 35 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programViral Protein Annotation Program

    Miscellaneousi

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3