SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q85036

- RDRP_ROTPY

UniProt

Q85036 - RDRP_ROTPY

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
RNA-directed RNA polymerase
Gene
N/A
Organism
Rotavirus A (strain Pig/Mexico/YM/1983 G11-P9[7]-I5-R1-C1-M1-A8-N1-T1-E1-H1) (RV-A)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at transcript leveli

Functioni

RNA-directed RNA polymerase that is involved in both transcription and genome replication. Together with VP3 capping enzyme, forms an enzyme complex positioned near the channels situated at each of the five-fold vertices of the core. Following infection, the outermost layer of the virus is lost, leaving a double-layered particle (DLP) made up of the core and VP6 shell. VP1 then catalyzes the transcription of fully conservative plus-strand genomic RNAs that are extruded through the DLP's channels into the cytoplasm where they function as mRNAs for translation of viral proteins. One copy of each of the viral (+)RNAs is also recruited during core assembly, together with newly synthesized polymerase complexes and VP2. The polymerase of these novo-formed particles catalyzes the synthesis of complementary minus-strands leading to dsRNA formation. To do so, the polymerase specifically recognizes and binds 4 bases 5'-UGUG-3' in the conserved 3'-sequence of plus-strand RNA templates. VP2 presumably activates the autoinhibited VP1-RNA complex to coordinate packaging and genome replication. Once dsRNA synthesis is complete, the polymerase switches to the transcriptional mode, thus providing secondary transcription By similarity.

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).

Cofactori

Magnesium Reviewed prediction.

GO - Molecular functioni

  1. RNA binding Source: UniProtKB-KW
  2. RNA-directed RNA polymerase activity Source: UniProtKB-KW
  3. nucleotide binding Source: UniProtKB-KW

GO - Biological processi

  1. transcription, DNA-templated Source: InterPro
  2. viral genome replication Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Nucleotidyltransferase, RNA-directed RNA polymerase, Transferase

Keywords - Biological processi

Viral RNA replication

Keywords - Ligandi

Magnesium, Nucleotide-binding, RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
RNA-directed RNA polymerase (EC:2.7.7.48)
Alternative name(s):
Protein VP1
OrganismiRotavirus A (strain Pig/Mexico/YM/1983 G11-P9[7]-I5-R1-C1-M1-A8-N1-T1-E1-H1) (RV-A)
Taxonomic identifieri10919 [NCBI]
Taxonomic lineageiVirusesdsRNA virusesReoviridaeSedoreovirinaeRotavirus
Virus hostiSus scrofa (Pig) [TaxID: 9823]

Subcellular locationi

Virion Reviewed prediction
Note: Attached inside the inner capsid as a minor component. Also found in spherical cytoplasmic structures, called virus factories, that appear early after infection and are the site of viral replication and packaging By similarity.

GO - Cellular componenti

  1. virion Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Virion

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10881088RNA-directed RNA polymerase
PRO_0000368048Add
BLAST

Interactioni

Subunit structurei

Interacts with VP3 Reviewed prediction. Interacts with VP2; this interaction activates VP1. Interacts with NSP5; this interaction is probably necessary for the formation of functional virus factories. Interacts with NSP2; this interaction is weak By similarity.

Structurei

3D structure databases

ProteinModelPortaliQ85036.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini501 – 687187RdRp catalytic
Add
BLAST

Sequence similaritiesi

Family and domain databases

InterProiIPR001795. RNA-dir_pol_luteovirus.
IPR007097. RNA-dir_pol_reovirus.
IPR022071. Rotavirus_VP1.
[Graphical view]
PfamiPF02123. RdRP_4. 1 hit.
PF12289. Rotavirus_VP1. 1 hit.
[Graphical view]
PROSITEiPS50523. RDRP_DSRNA_REO. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q85036-1 [UniParc]FASTAAdd to Basket

« Hide

MGKYNLILSE YLSFVYNSQS AVQIPIYYSS NSELEKRCID FHAKCVDNSK     50
KGLSLSSLFE EYKDVIDNAT LLSILSYSYD KYNAVERKLI NYAKGKPLEA 100
DLTANELDYE NNKITSELFK SAEEYTDSLM DPAILTSISS NLNAVMFWLE 150
RHSNDVGDAN KVYRRRLDLF IIVASTINKY GVPRHNEKYR YEYEVMKDKP 200
YYLVTWANSA IEMLMSVFSH EDYLIAKELI ILSYSNRSTL AKLVSSPMSI 250
LVALIDINGT FITNEELELE FSDKYVKAIV PDQTFNELQE MIDNMKKAGL 300
VDIPRMIQEW LVDCSLEKFT LMSKIYSWSF HVGFRKQKMI DAALDQLKTE 350
YTEDVDNEMY NEYTMLIRDE IVKMLEVPVK HDDHLLRDSE LAGLLSMSSA 400
SNGESRQLKF GRKTIFSTKK NMHVMDDIAH GRYTPGVIPP VNVDRPIPLG 450
RRDVPGRRTR IIFILPYEYN SAQHAVVEKM LSYAKHTREY AEFYSQSNQL 500
LSYGDVTRFL SSNSMVLYTD VSQWDSSQHN TQPFRKGIIM GLDMLANMTN 550
DPKVVQTLNL YKQTQINLMD SYVQIPDGNV IKKIQYGAVA SGEKQTKAAN 600
SIANLALIKT VLSRIANKYS FITKIIRVDG DDNYAVLQFN TDVTKQMVQE 650
VSNDVRYIYS RMNAKVKALV STVGIEIAKR YIAGGKIFFR AGINLLNNEK 700
RGQSTQWDQA AILYSNYIVN KLRGFDTDRE FILTKIIQMT SVAITGSLRL 750
FPSERVLTTN STFKVFDSED FIIEYGTTDD EVYIQRAFMS LSSQKSGIAD 800
EIASSQTFKN YVSKLSDQLL VSKNAIVSKG IAVTEKAKLN SYAPVYLEKR 850
RAQISALLTM LQKPVSFKSN KITINDILRD IKPFFVTTEA KLPIQYRKFM 900
PTLPDNVQYV IQCIGSRTYQ IEDSGSKSSI SKLISKYSVY KPSIEELYKV 950
ISLREQEIQL YLVSLGVPPV DAGTYVGSRI YSQDKYKILE SYVYNLLSIN 1000
YGCYQLFDFN SPDLEKLIRI PFKGKIPAVT FILHLYAKLE IINYAIKNKS 1050
WISLFCNYPK SEMIKLWKKM WNITALRSPY TSANFFQD 1088
Length:1,088
Mass (Da):124,793
Last modified:November 1, 1996 - v1
Checksum:i73C5723B9EA74357
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X76486 mRNA. Translation: CAA54024.1.
PIRiS39261.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
X76486 mRNA. Translation: CAA54024.1 .
PIRi S39261.

3D structure databases

ProteinModelPortali Q85036.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Family and domain databases

InterProi IPR001795. RNA-dir_pol_luteovirus.
IPR007097. RNA-dir_pol_reovirus.
IPR022071. Rotavirus_VP1.
[Graphical view ]
Pfami PF02123. RdRP_4. 1 hit.
PF12289. Rotavirus_VP1. 1 hit.
[Graphical view ]
PROSITEi PS50523. RDRP_DSRNA_REO. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Amino acid sequence of the porcine rotavirus YM VP1 protein."
    Almanza L., Arias C.F., Lopez S.
    Res. Virol. 145:313-317(1994) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].

Entry informationi

Entry nameiRDRP_ROTPY
AccessioniPrimary (citable) accession number: Q85036
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: November 1, 1996
Last modified: April 16, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi