Q84ZU4 (Q84ZU4_NICGU) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names	Submitted name: Telomere binding protein TBP1 EMBL AAN39330.1
Organism	Nicotiana glutinosa (Tobacco) EMBL AAN39330.1
Taxonomic identifier	35889 [NCBI]
Taxonomic lineage	Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › asterids › lamiids › Solanales › Solanaceae › Nicotianoideae › Nicotianeae › Nicotiana

Protein attributes

Sequence length	681 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 2CKX PDB 2JUH PDB 2QHB
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro
Molecular function	DNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q84ZU4 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: 567FB74365C8D165	FASTA	681	75,922
	10 20 30 40 50 60 MVSKKKLDFG FNGFQVPFIP KAPRSVRRRG TCKKFDDDQI CAFELLAAVA GKLLQESESS 70 80 90 100 110 120 TSSNAAEGKY ELSDCRDGIK CEQVEEDKAV KSECLDQGSC VESAYVPEPA VREQNLKRDL 130 140 150 160 170 180 DKPYYAENSS ILEQHTSTVI GSDSDMTLEN CKEVNVADGN FPAKVEDFDS KISGTQKHLD 190 200 210 220 230 240 DDSKQIDDLT VTNACRVKGP IEKHVNNNAL FNSESSVQLS LYRDLVPRAS FVKQRNSVKL 250 260 270 280 290 300 GVRDDDDNSF GCYRYSTKLR TFRTTSRIGY RRIRKMLTSR RWKVAPKLKE YERSYTNGGV 310 320 330 340 350 360 ESFYVSGKSG RARKRCQPEV PSKRRKLSDH GFAFAYYQEA SSESISNSPE KGIKRDTNTS 370 380 390 400 410 420 HAIPPRGTAD SVTVKNHHKK DPNVKFSIKS FKVPELYIEV PETATVGSLK RTVMEAVTAI 430 440 450 460 470 480 LESGLRVGMV LQGKKVRDDS RTLEQAGISQ NGNLDNLGFT LEPRFTQVSP SLSPNDRPAS 490 500 510 520 530 540 SAYVADQELT RLPPSPSSEL GITNASSDPP ATTLDKHHEN NFSAELFPTN SVDPSTDIAI 550 560 570 580 590 600 PDSRALVIVP PVNPEALAMV PVNQKSKRSE LSQRRIRRPF SVAEVEALVE AVEHLGTGRW 610 620 630 640 650 660 RDVKMRAFDN ADHRTYVDLK DKWKTLVHTA SIAPQQRRGE PVPQDLLDRV LAAHAYWSQQ 670 680 QGKQHVEPLK ILDAKAQKVG A

References

[1]	"Expression of the telomeric repeat binding factor gene NgTRF1 is closely coordinated with the cell division program in tobacco BY-2 suspension culture cells." Yang S.W., Kim D.H., Lee J.J., Chun Y.J., Lee J.H., Kim Y.J., Chung I.K., Kim W.T. J. Biol. Chem. 278:21395-21407(2003) [PubMed: 12646586] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	"Structure of the DNA-binding domain of NgTRF1 reveals unique features of plant telomere-binding proteins." Ko S., Jun S.H., Bae H., Byun J.S., Han W., Park H., Yang S.W., Park S.Y., Jeon Y.H., Cheong C., Kim W.T., Lee W., Cho H.S. Nucleic Acids Res. 36:2739-2755(2008) [PubMed: 18367475] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.90 ANGSTROMS) OF 578-660.
[3]	"Solution structure of DNA binding domain of ngTRF1." Lee N., Ko S. Submitted (AUG-2007) to the PDB data bank Cited for: STRUCTURE BY NMR OF 561-681.
[4]	"Complex structure of plant telomere bindig protein, NgTRF and telomere DNA." Cho H.-S., Byun J.-S., Jun S.-H., Han W., Lee W. Submitted (JUL-2007) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (2.40 ANGSTROMS) OF 574-659.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AF543195 mRNA. Translation: AAN39330.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2CKX	X-ray	1.90	A	578-660	[»]
2JUH	NMR	-	A	561-681	[»]
2QHB	X-ray	2.40	A/B	574-659	[»]

ProteinModelPortal

Q84ZU4.

SMR

Q84ZU4. Positions 578-660.

ModBase

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Protocols and materials databases

StructuralBiologyKnowledgebase

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Family and domain databases

InterPro

IPR009057. Homeodomain-like.
IPR012287. Homeodomain-rel.
IPR001005. SANT_DNA-bd.
IPR017930. Tscrpt_reg_HTH_Myb-type.
IPR019955. Ubiquitin_supergroup.
[Graphical view]

Gene3D

G3DSA:1.10.10.60. Homeodomain-rel. 1 hit.

SMART

SM00717. SANT. 1 hit.
[Graphical view]

SUPFAM

SSF46689. Homeodomain_like. 1 hit.

PROSITE

PS51294. HTH_MYB. 1 hit.
PS50053. UBIQUITIN_2. 1 hit.
[Graphical view]

ProtoNet

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Entry information

Entry name

Q84ZU4_NICGU

Accession

Primary (citable) accession number: Q84ZU4

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	June 1, 2003
Last modified:	June 28, 2011
This is version 52 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)