Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q84WW2

- 6PGL5_ARATH

UniProt

Q84WW2 - 6PGL5_ARATH

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Probable 6-phosphogluconolactonase 5, chloroplastic

Gene

EMB2024

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at transcript leveli

Functioni

Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.By similarity

Catalytic activityi

6-phospho-D-glucono-1,5-lactone + H2O = 6-phospho-D-gluconate.

Pathwayi

GO - Molecular functioni

  1. 6-phosphogluconolactonase activity Source: TAIR

GO - Biological processi

  1. cellular response to redox state Source: TAIR
  2. defense response to bacterium Source: TAIR
  3. defense response to oomycetes Source: TAIR
  4. nitrate assimilation Source: TAIR
  5. pentose-phosphate shunt Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase

Enzyme and pathway databases

BioCyciARA:AT5G24400-MONOMER.
UniPathwayiUPA00115; UER00409.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable 6-phosphogluconolactonase 5, chloroplastic (EC:3.1.1.31)
Short name:
6PGL 5
Alternative name(s):
Protein EMBRYO DEFECTIVE 2024
Gene namesi
Name:EMB2024
Ordered Locus Names:At5g24400
ORF Names:K16H17.11
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
ProteomesiUP000006548: Chromosome 5

Organism-specific databases

TAIRiAT5G24400.

Subcellular locationi

Plastidchloroplast Curated

GO - Cellular componenti

  1. chloroplast Source: TAIR
  2. chloroplast stroma Source: TAIR
  3. peroxisome Source: TAIR
  4. plastid Source: TAIR
Complete GO annotation...

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 6868ChloroplastSequence AnalysisAdd
BLAST
Chaini69 – 325257Probable 6-phosphogluconolactonase 5, chloroplasticPRO_0000288672Add
BLAST

Proteomic databases

PaxDbiQ84WW2.
PRIDEiQ84WW2.

Expressioni

Gene expression databases

GenevestigatoriQ84WW2.

Interactioni

Protein-protein interaction databases

BioGridi17786. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliQ84WW2.
SMRiQ84WW2. Positions 83-325.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiCOG0363.
HOGENOMiHOG000256285.
InParanoidiQ84WW2.
KOiK01057.
OMAiTYGLYKS.
PhylomeDBiQ84WW2.

Family and domain databases

InterProiIPR005900. 6-phosphogluconolactonase_DevB.
IPR006148. Glc/Gal-6P_isomerase.
[Graphical view]
PfamiPF01182. Glucosamine_iso. 1 hit.
[Graphical view]
TIGRFAMsiTIGR01198. pgl. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q84WW2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MASSSCFLRS ILFSSPTNLR SNHHLPTFFP KNYLICSHST SSRFESLSVS
60 70 80 90 100
SIGTGSTKKS SDTRRKVKSM ATTNIGKEEK KRVEIYDLEE NLVIDLAKFT
110 120 130 140 150
ADLSDKFCKE RGAFTVVVSG GSLIKSLRKL VESPYVDSID WARWHFFWVD
160 170 180 190 200
ERVVPKNHDD SNYKLAYDSF LSKVPIPPGN VYAINEALSA EAAADDYETC
210 220 230 240 250
LKHLVNTNIL RVSESTGFPK FDLMLLGMGP DGHVASLFPG HGLCNESKKW
260 270 280 290 300
VVSISDSPKP PSERITFTFP VINSSAHVAL VVCGSGKAEA VEAALKKTGN
310 320
VPPAGSVSAE DELVWFLDKP ASSKL
Length:325
Mass (Da):35,645
Last modified:June 1, 2003 - v1
Checksum:i0FBC6E95F9C073DC
GO

Sequence cautioni

The sequence BAB11233.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti30 – 301P → L in AAM63366. 1 PublicationCurated
Sequence conflicti33 – 331Y → H in AAM63366. 1 PublicationCurated
Sequence conflicti93 – 942VI → AV in AAM63366. 1 PublicationCurated

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB016884 Genomic DNA. Translation: BAB11233.1. Different initiation.
CP002688 Genomic DNA. Translation: AED93307.1.
BT001923 mRNA. Translation: AAN71922.1.
AY086161 mRNA. Translation: AAM63366.1.
Z26557 mRNA. Translation: CAA81328.1.
RefSeqiNP_568445.1. NM_122348.2.
UniGeneiAt.19070.

Genome annotation databases

EnsemblPlantsiAT5G24400.1; AT5G24400.1; AT5G24400.
GeneIDi832511.
KEGGiath:AT5G24400.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AB016884 Genomic DNA. Translation: BAB11233.1 . Different initiation.
CP002688 Genomic DNA. Translation: AED93307.1 .
BT001923 mRNA. Translation: AAN71922.1 .
AY086161 mRNA. Translation: AAM63366.1 .
Z26557 mRNA. Translation: CAA81328.1 .
RefSeqi NP_568445.1. NM_122348.2.
UniGenei At.19070.

3D structure databases

ProteinModelPortali Q84WW2.
SMRi Q84WW2. Positions 83-325.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 17786. 1 interaction.

Proteomic databases

PaxDbi Q84WW2.
PRIDEi Q84WW2.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi AT5G24400.1 ; AT5G24400.1 ; AT5G24400 .
GeneIDi 832511.
KEGGi ath:AT5G24400.

Organism-specific databases

TAIRi AT5G24400.

Phylogenomic databases

eggNOGi COG0363.
HOGENOMi HOG000256285.
InParanoidi Q84WW2.
KOi K01057.
OMAi TYGLYKS.
PhylomeDBi Q84WW2.

Enzyme and pathway databases

UniPathwayi UPA00115 ; UER00409 .
BioCyci ARA:AT5G24400-MONOMER.

Gene expression databases

Genevestigatori Q84WW2.

Family and domain databases

InterProi IPR005900. 6-phosphogluconolactonase_DevB.
IPR006148. Glc/Gal-6P_isomerase.
[Graphical view ]
Pfami PF01182. Glucosamine_iso. 1 hit.
[Graphical view ]
TIGRFAMsi TIGR01198. pgl. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence features of the regions of 1,081,958 bp covered by seventeen physically assigned P1 and TAC clones."
    Asamizu E., Sato S., Kaneko T., Nakamura Y., Kotani H., Miyajima N., Tabata S.
    DNA Res. 5:379-391(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Columbia.
  2. The Arabidopsis Information Resource (TAIR)
    Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
    Cited for: GENOME REANNOTATION.
    Strain: cv. Columbia.
  3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
    Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
    , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
    Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: cv. Columbia.
  4. "Full-length cDNA from Arabidopsis thaliana."
    Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
    Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
  5. "The Arabidopsis thaliana transcribed genome: the GDR cDNA program."
    Desprez T., Amselem J., Chiapello H., Caboche M., Hoefte H.
    Submitted (SEP-1993) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 242-325.
    Strain: cv. Columbia.
    Tissue: Seedling.

Entry informationi

Entry namei6PGL5_ARATH
AccessioniPrimary (citable) accession number: Q84WW2
Secondary accession number(s): Q42135, Q8LD77, Q9FIN2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 29, 2007
Last sequence update: June 1, 2003
Last modified: October 29, 2014
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3