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Q84WW2

- 6PGL5_ARATH

UniProt

Q84WW2 - 6PGL5_ARATH

Protein

Probable 6-phosphogluconolactonase 5, chloroplastic

Gene

EMB2024

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed - Annotation score: 4 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 76 (01 Oct 2014)
      Sequence version 1 (01 Jun 2003)
      Previous versions | rss
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    Functioni

    Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.By similarity

    Catalytic activityi

    6-phospho-D-glucono-1,5-lactone + H2O = 6-phospho-D-gluconate.

    Pathwayi

    GO - Molecular functioni

    1. 6-phosphogluconolactonase activity Source: TAIR

    GO - Biological processi

    1. cellular response to redox state Source: TAIR
    2. defense response to bacterium Source: TAIR
    3. defense response to oomycetes Source: TAIR
    4. pentose-phosphate shunt Source: UniProtKB-UniPathway

    Keywords - Molecular functioni

    Hydrolase

    Enzyme and pathway databases

    BioCyciARA:AT5G24400-MONOMER.
    UniPathwayiUPA00115; UER00409.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Probable 6-phosphogluconolactonase 5, chloroplastic (EC:3.1.1.31)
    Short name:
    6PGL 5
    Alternative name(s):
    Protein EMBRYO DEFECTIVE 2024
    Gene namesi
    Name:EMB2024
    Ordered Locus Names:At5g24400
    ORF Names:K16H17.11
    OrganismiArabidopsis thaliana (Mouse-ear cress)
    Taxonomic identifieri3702 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
    ProteomesiUP000006548: Chromosome 5

    Organism-specific databases

    TAIRiAT5G24400.

    Subcellular locationi

    Plastidchloroplast Curated

    GO - Cellular componenti

    1. chloroplast Source: TAIR
    2. chloroplast stroma Source: TAIR
    3. peroxisome Source: TAIR

    Keywords - Cellular componenti

    Chloroplast, Plastid

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transit peptidei1 – 6868ChloroplastSequence AnalysisAdd
    BLAST
    Chaini69 – 325257Probable 6-phosphogluconolactonase 5, chloroplasticPRO_0000288672Add
    BLAST

    Proteomic databases

    PaxDbiQ84WW2.
    PRIDEiQ84WW2.

    Expressioni

    Gene expression databases

    GenevestigatoriQ84WW2.

    Interactioni

    Protein-protein interaction databases

    BioGridi17786. 1 interaction.

    Structurei

    3D structure databases

    ProteinModelPortaliQ84WW2.
    SMRiQ84WW2. Positions 83-325.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Keywords - Domaini

    Transit peptide

    Phylogenomic databases

    eggNOGiCOG0363.
    HOGENOMiHOG000256285.
    InParanoidiQ84WW2.
    KOiK01057.
    OMAiTYGLYKS.
    PhylomeDBiQ84WW2.

    Family and domain databases

    InterProiIPR005900. 6-phosphogluconolactonase_DevB.
    IPR006148. Glc/Gal-6P_isomerase.
    [Graphical view]
    PfamiPF01182. Glucosamine_iso. 1 hit.
    [Graphical view]
    TIGRFAMsiTIGR01198. pgl. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q84WW2-1 [UniParc]FASTAAdd to Basket

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    MASSSCFLRS ILFSSPTNLR SNHHLPTFFP KNYLICSHST SSRFESLSVS    50
    SIGTGSTKKS SDTRRKVKSM ATTNIGKEEK KRVEIYDLEE NLVIDLAKFT 100
    ADLSDKFCKE RGAFTVVVSG GSLIKSLRKL VESPYVDSID WARWHFFWVD 150
    ERVVPKNHDD SNYKLAYDSF LSKVPIPPGN VYAINEALSA EAAADDYETC 200
    LKHLVNTNIL RVSESTGFPK FDLMLLGMGP DGHVASLFPG HGLCNESKKW 250
    VVSISDSPKP PSERITFTFP VINSSAHVAL VVCGSGKAEA VEAALKKTGN 300
    VPPAGSVSAE DELVWFLDKP ASSKL 325
    Length:325
    Mass (Da):35,645
    Last modified:June 1, 2003 - v1
    Checksum:i0FBC6E95F9C073DC
    GO

    Sequence cautioni

    The sequence BAB11233.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti30 – 301P → L in AAM63366. 1 PublicationCurated
    Sequence conflicti33 – 331Y → H in AAM63366. 1 PublicationCurated
    Sequence conflicti93 – 942VI → AV in AAM63366. 1 PublicationCurated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB016884 Genomic DNA. Translation: BAB11233.1. Different initiation.
    CP002688 Genomic DNA. Translation: AED93307.1.
    BT001923 mRNA. Translation: AAN71922.1.
    AY086161 mRNA. Translation: AAM63366.1.
    Z26557 mRNA. Translation: CAA81328.1.
    RefSeqiNP_568445.1. NM_122348.2.
    UniGeneiAt.19070.

    Genome annotation databases

    EnsemblPlantsiAT5G24400.1; AT5G24400.1; AT5G24400.
    GeneIDi832511.
    KEGGiath:AT5G24400.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB016884 Genomic DNA. Translation: BAB11233.1 . Different initiation.
    CP002688 Genomic DNA. Translation: AED93307.1 .
    BT001923 mRNA. Translation: AAN71922.1 .
    AY086161 mRNA. Translation: AAM63366.1 .
    Z26557 mRNA. Translation: CAA81328.1 .
    RefSeqi NP_568445.1. NM_122348.2.
    UniGenei At.19070.

    3D structure databases

    ProteinModelPortali Q84WW2.
    SMRi Q84WW2. Positions 83-325.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 17786. 1 interaction.

    Proteomic databases

    PaxDbi Q84WW2.
    PRIDEi Q84WW2.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi AT5G24400.1 ; AT5G24400.1 ; AT5G24400 .
    GeneIDi 832511.
    KEGGi ath:AT5G24400.

    Organism-specific databases

    TAIRi AT5G24400.

    Phylogenomic databases

    eggNOGi COG0363.
    HOGENOMi HOG000256285.
    InParanoidi Q84WW2.
    KOi K01057.
    OMAi TYGLYKS.
    PhylomeDBi Q84WW2.

    Enzyme and pathway databases

    UniPathwayi UPA00115 ; UER00409 .
    BioCyci ARA:AT5G24400-MONOMER.

    Gene expression databases

    Genevestigatori Q84WW2.

    Family and domain databases

    InterProi IPR005900. 6-phosphogluconolactonase_DevB.
    IPR006148. Glc/Gal-6P_isomerase.
    [Graphical view ]
    Pfami PF01182. Glucosamine_iso. 1 hit.
    [Graphical view ]
    TIGRFAMsi TIGR01198. pgl. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence features of the regions of 1,081,958 bp covered by seventeen physically assigned P1 and TAC clones."
      Asamizu E., Sato S., Kaneko T., Nakamura Y., Kotani H., Miyajima N., Tabata S.
      DNA Res. 5:379-391(1998) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Columbia.
    2. The Arabidopsis Information Resource (TAIR)
      Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases
      Cited for: GENOME REANNOTATION.
      Strain: cv. Columbia.
    3. "Empirical analysis of transcriptional activity in the Arabidopsis genome."
      Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G.
      , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
      Science 302:842-846(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Columbia.
    4. "Full-length cDNA from Arabidopsis thaliana."
      Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A.
      Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    5. "The Arabidopsis thaliana transcribed genome: the GDR cDNA program."
      Desprez T., Amselem J., Chiapello H., Caboche M., Hoefte H.
      Submitted (SEP-1993) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 242-325.
      Strain: cv. Columbia.
      Tissue: Seedling.

    Entry informationi

    Entry namei6PGL5_ARATH
    AccessioniPrimary (citable) accession number: Q84WW2
    Secondary accession number(s): Q42135, Q8LD77, Q9FIN2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 29, 2007
    Last sequence update: June 1, 2003
    Last modified: October 1, 2014
    This is version 76 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Arabidopsis thaliana
      Arabidopsis thaliana: entries and gene names
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3