Reviewed,
UniProtKB/Swiss-Prot Q84WW1 (FB140_ARATH)
Last modified
June 16, 2009.
Version 36.
History...
Clusters with 100%,
90%,
50% identity |
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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Binary interactions · Sequence annotation (Features) · Sequences · References · Web resources · Cross-references · Entry information · Relevant documents
Names and origin
| Protein names | Recommended name: F-box protein At3g12350 | ||||
| Gene names |
| ||||
| Organism | Arabidopsis thaliana (Mouse-ear cress) [Complete proteome] | ||||
| Taxonomic identifier | 3702 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis |
Protein attributes
| Sequence length | 422 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is not processed. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Sequence similarities | Contains 1 F-box domain. |
| Sequence caution | The sequence AAG51006.1 differs from that shown. Reason: Erroneous gene model prediction. The sequence BAB03143.1 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene At3g12350 has been split into 2 genes: At3g12350 and At3g12360. |
Ontologies
| Keywords | |
|---|---|
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Molecular function | protein binding Inferred from physical interaction. Source: IntAct |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| CAM1 | P25854 | 1 | EBI-1238751,EBI-1235664 | |
| CAM7 | P59220 | 1 | EBI-1238751,EBI-1236031 | |
| CML10 | P30187 | 1 | EBI-1238751,EBI-1238722 |
Sequence annotation (Features)
Sequences
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References
| [1] | "Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones." Kaneko T., Katoh T., Sato S., Nakamura Y., Asamizu E., Tabata S. DNA Res. 7:217-221(2000) [PubMed: 10907853] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia. |
| [2] | "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana." Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M., Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V., Choisne N., Artiguenave F. Tabata S.Nature 408:820-822(2000) [PubMed: 11130713] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Columbia. |
| [3] | "Empirical analysis of transcriptional activity in the Arabidopsis genome." Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. Ecker J.R.Science 302:842-846(2003) [PubMed: 14593172] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Columbia. |
| [4] | "Full-length cDNA from Arabidopsis thaliana." Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B., Feldmann K.A. Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. |
Web resources
| PlantsUBQ A functional genomics database for the ubiquitin/26S proteasome proteolytic pathway in plants |
Cross-references
Sequence databases | |
|---|---|
| AP002047 Genomic DNA. Translation: BAB03143.1. Sequence problems. AC069474 Genomic DNA. Translation: AAG51006.1. Sequence problems. BT001925 mRNA. Translation: AAN71924.1. AY086584 mRNA. Translation: AAM63646.1. | |
| IPI | IPI00533688. |
| RefSeq | NP_566421.1. |
| UniGene | At.27112 |
3D structure databases | |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q84WW1. 3 interactions. |
Genome annotation databases | |
| GeneID | 820413. |
| GenomeReviews | Gene locus AT3G12350 in contig BA000014_GR. |
| KEGG | ath:AT3G12350. |
| NMPDR | fig|3702.1.peg.13308. |
Organism-specific databases | |
| TAIR | At3g12350. |
Phylogenomic databases | |
| OMA | Q84WW1. PLQGLWK. |
Gene expression databases | |
| ArrayExpress | Q84WW1. |
Family and domain databases | |
| InterPro | IPR001810. F-box. [Graphical view] |
| Pfam | PF00646. F-box. 1 hit. [Graphical view] |
| SMART | SM00256. FBOX. 1 hit. [Graphical view] |
| PROSITE | PS50181. FBOX. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | FB140_ARATH | ||||||||
| Accession | Primary (citable) accession number: Q84WW1 Secondary accession number(s): Q8LCI5, Q9C7A1, Q9LHH2 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | PPAP (Plant Proteome Annotation Project) | ||||||||
Relevant documents
| Arabidopsis thaliana Arabidopsis thaliana: entries and gene names |
| SIMILARITY comments Index of protein domains and families |

Clusters with


